Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C21
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)                 57   2e-08
SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    33   0.27 
SB_46264| Best HMM Match : rve (HMM E-Value=1.9e-16)                   32   0.48 
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44128| Best HMM Match : rve (HMM E-Value=0.0074)                    30   2.5  
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
          Length = 337

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = -1

Query: 469 RNSYIKYAVGMICTHKKHKYTGIIRGWD-LIWAADWKEHGEALNRLEFGHNQPFYYLIIA 293
           R+S + Y VGM+  H+++ Y  +I GWD     +D       ++RL  G +QPFY ++  
Sbjct: 237 RHSKVIYKVGMVMRHRRYHYGCVIWGWDPFCNMSDAWIQQMGVDRLPNGRSQPFYNVLGD 296

Query: 292 NQSSRYVAQENLSALTVPPRMPHLEDLIAREFTHFNGYAYEPN 164
           + +SRY A+ENL   T      H +  + + F  + G+ Y PN
Sbjct: 297 DGTSRYAAEENLVIETGQEFNRHPD--LGKYFKAWKGHRYIPN 337


>SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
 Frame = -1

Query: 469 RNSYIKYAVGMICTHKKHKYTGIIRGWD-LIWAAD-WKEHGEALNRLEFGHNQPFYYLII 296
           R S +KY VG +  HK   Y  +I GWD  + A D W++     ++  +  + P Y L++
Sbjct: 148 RPSNVKYRVGQVIRHKLWNYRAVIVGWDPKLKAPDFWRDANHPADKKHW-KDMPNYALLV 206

Query: 295 ANQSS-----RYVAQENLSALTVPPRMPHLEDLIAREFTHFNGYAYEPNDEKRMEYPDD 134
             +        YV +EN+  +T   ++ H E  +   F + +G  Y P    +  YP D
Sbjct: 207 DTRDRPSPQITYVPEENIEVIT-GTKIFHEE--VEEFFEYHDGAVYIPRPWLKKLYPHD 262


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -1

Query: 748 SYLNSMGVHDNWTTQNSLRXVDLLNPSQNLDNVNQ-SHLSYLRNEVDLANYPELSYNALH 572
           S  N+   H+NW+T N+ R +  L   Q L++  Q  +L    N   L ++ +L Y    
Sbjct: 89  STYNNWSTHNNWSTYNNWRYLQQLKCPQQLEHPQQLGYLQQQENLQPLKHHQQLKY---- 144

Query: 571 CSHARLLSSLSYLANTIHI 515
               + L  L +L    H+
Sbjct: 145 LQRVQYLQQLEHLQQLEHL 163


>SB_46264| Best HMM Match : rve (HMM E-Value=1.9e-16)
          Length = 979

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/80 (27%), Positives = 41/80 (51%)
 Frame = -1

Query: 442 GMICTHKKHKYTGIIRGWDLIWAADWKEHGEALNRLEFGHNQPFYYLIIANQSSRYVAQE 263
           G+ C HK +K   +I     +    W+    A++  +  +N+   YL++ +  SR+V  +
Sbjct: 774 GICCKHKSNKAEPMIVS--NLPKLPWQRI--AMDLFQLKNNK---YLLVVDYFSRFVEVK 826

Query: 262 NLSALTVPPRMPHLEDLIAR 203
            L+  T P  + HL+ LI+R
Sbjct: 827 KLTCTTAPAVIDHLKSLISR 846


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 654 LSRFWDGLSRSTXRRLFCVVQLSCTPIELRYEESICCNNFSGQYLRI 794
           LS +  GL     R  F  V+L CT    RY  S+C  +F  Q +R+
Sbjct: 201 LSTYIPGLELEGIRIFFFTVRLRCTVCACRYVHSVCV-SFRSQCVRV 246


>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 703 NSLRXVDLLNPSQNLDNVNQSHLSYLRNEVDLANYPELSYNALHCSHARLLSSLSYLANT 524
           N  R +D LN S+N+D  N+SH+    +E    +    S N  +   +R ++S     N+
Sbjct: 549 NESRNIDGLNESRNIDGTNESHIIASTDESRNIDGQNESRNIANTDESRNIASTDESRNS 608


>SB_44128| Best HMM Match : rve (HMM E-Value=0.0074)
          Length = 134

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/87 (26%), Positives = 42/87 (48%)
 Frame = -1

Query: 463 SYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKEHGEALNRLEFGHNQPFYYLIIANQS 284
           S+I    G+ C HK +K   +I     +    W     A++  +  +N+   +L++ +  
Sbjct: 11  SWIVQNCGICCKHKSNKAEPMIVS--NLPKLPWHI---AMDLFQLKNNK---HLLVVDYF 62

Query: 283 SRYVAQENLSALTVPPRMPHLEDLIAR 203
           SR+V  E L+  T P  + HL+ L +R
Sbjct: 63  SRFVEVEKLTCTTAPAVIGHLKSLFSR 89


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 223  LEDLIAREFTHFNGYAYEPNDEKRMEYPDDMHISNMFRSCVEVRYGEPNQDKKK 62
            LED I RE    +  A  PN+EK+ +     H  + F  C  +R G+  +DKK+
Sbjct: 1393 LEDEIDREL---HPDAPLPNEEKKKDKVASEHPPSCFAGCGGMRKGKAPKDKKE 1443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,894,620
Number of Sequences: 59808
Number of extensions: 479555
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)