Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C21
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   7.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -2

Query: 126 LAICFGVALKLDTESRIRTRRNLFKXKLEMITGDETQ 16
           +A C+G   +   E+ ++T + + + + EM+ G + Q
Sbjct: 263 IATCYGGRNRKICEAFVKTGKKISELEKEMLNGQKLQ 299


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 254 REVFLSHISAGLISNDEVVEWLIV 325
           +E+  SHI AGL+      +WL V
Sbjct: 634 KELIPSHIMAGLLDKFFFPKWLQV 657


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 422 LVSAYHTNCIFNVTVSFLNNNMRKHISIGRRYVDGI 529
           ++S+   N I N++    NNN  K +     Y++ I
Sbjct: 81  IISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQI 116


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 422 LVSAYHTNCIFNVTVSFLNNNMRKHISIGRRYVDGI 529
           ++S+   N I N++    NNN  K +     Y++ I
Sbjct: 319 IISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,922
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)