Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C21
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03390.1 68415.m00298 uvrB/uvrC motif-containing protein cont...    37   0.018
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    30   2.1  
At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein si...    29   2.7  
At2g18150.1 68415.m02112 peroxidase, putative peroxidase [Arabid...    29   3.6  
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    28   8.4  
At2g18140.1 68415.m02111 peroxidase, putative similar to peroxid...    28   8.4  

>At2g03390.1 68415.m00298 uvrB/uvrC motif-containing protein
           contains Pfam profile PF02151: UvrB/uvrC motif
          Length = 330

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = -1

Query: 451 YAVGMICTHKKHKYTGIIRGWDLIWA--ADWKEHGEALNRLEFGHNQPFYYLIIANQSS- 281
           + +G    HK   Y  ++ G D I +  + W E  E + +L  G NQPFY +++  ++  
Sbjct: 206 FRLGQKLRHKTFGYRAVVCGMDPICSESSSWMEAAE-VEKLPRGSNQPFYQVLVDVRTHP 264

Query: 280 ----RYVAQENLSALTVPPR 233
                YVA++NL A   P +
Sbjct: 265 DLLVAYVAEDNLLAPEKPDK 284


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 508 SDRYMFPHVV-VKKRNSYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKE 359
           +D+ MF H+  +   + +  + + ++   ++  +   +R W+++WAAD+ E
Sbjct: 463 TDKEMFSHLSRIGAESLHFAFRMLLVLFRRELSFNKALRMWEMMWAADFDE 513


>At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 756

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/67 (20%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -1

Query: 556 LLSSLSYLANTIHITASDRYMFPHVV-VKKRNSYIKYAVGMICTHKKHKYTGIIRGWDLI 380
           ++  L  L + + IT  D+ +F H+  +   + +  + + ++   ++  +   +R W+++
Sbjct: 445 VMDQLQSLWHILQIT--DKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMM 502

Query: 379 WAADWKE 359
           WAAD+ E
Sbjct: 503 WAADYDE 509


>At2g18150.1 68415.m02112 peroxidase, putative peroxidase
           [Arabidopsis thaliana] gi|6822093|emb|CAB71009;
           identical to cDNA class III peroxidase ATP36 pseudogene,
           GI:17530548; contains Pfam profile PF00141: Peroxidase
          Length = 338

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 796 NIRRYCPEKLLQQILSSY-LNSMGVHDNWTTQNSLRXVDLLNPSQNLDNVNQ 644
           N+R+ CP     Q LS   +NS G  DN   +N +  + LLN  + L + N+
Sbjct: 237 NLRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDEVLFSSNE 288


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -1

Query: 703 NSLRXVDLLNPSQNLDNVNQSHLSYLRNEVDLANYPELSYNALHCSHARLLSSLSYLANT 524
           ++L   DL N    L+ + + H +   ++V L NY ++SY  L     R  +S+S L   
Sbjct: 185 DNLGFSDLPNHKAILETILRQHATLSLDDVLLVNYGQVSYK-LQVLELRPATSISVLETD 243

Query: 523 IHI 515
           I +
Sbjct: 244 IEV 246


>At2g18140.1 68415.m02111 peroxidase, putative similar to peroxidase
           ATP6a [Arabidopsis thaliana] gi|1429215|emb|CAA67310
          Length = 337

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 793 IRRYCPEKLLQQILSSY-LNSMGVHDNWTTQNSLRXVDLLNPSQNLDNVNQ 644
           +R+ CP     Q LS   +NS G  DN   +N +  + LLN  Q L + N+
Sbjct: 237 LRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDQVLFSSNE 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,728
Number of Sequences: 28952
Number of extensions: 324374
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)