Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C20
(397 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37) 70 6e-13
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17) 31 0.26
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 29 1.0
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 28 3.2
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28) 28 3.2
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 27 4.2
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11) 27 4.2
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027) 27 7.3
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097) 27 7.3
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) 26 9.6
>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
Length = 116
Score = 70.1 bits (164), Expect = 6e-13
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -3
Query: 254 SDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQK 75
S + +W G+ + GL R+D + E DV EA+RR+P + RNFRIVRAI +M+
Sbjct: 19 SAAFREWYIYACGYRQIGLKREDLIIEDSDVAEAVRRIPEEERNLRNFRIVRAIDTTMKM 78
Query: 74 TILPKEEWTKYEEDSRDXTPIVEQ 3
LP+E WTK ED P++++
Sbjct: 79 KWLPEELWTKPSEDVPYLDPVIQK 102
>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
Length = 683
Score = 31.5 bits (68), Expect = 0.26
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -3
Query: 200 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSR 27
LL + LH+ PD +AL + + + + FRI +A+ S +K I + + Y+ S+
Sbjct: 343 LLAEPALHKDPDTIKALWKATVNELGDLEFRIQQAMTSSSKKPIAEEYSFLVYDGFSK 400
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 191 DDCLHETPDVTEALRRLPS--HVVDERNFRIVRAIQLSMQ-KTILPKEEWTKYEED 33
DDCLH TP EA+R ++ FR+ + + S + + LP+ E T +D
Sbjct: 1166 DDCLHSTPTEAEAVRLATDLRELLARGGFRLTKFVSNSKELLSSLPESERTTSVKD 1221
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/58 (18%), Positives = 28/58 (48%)
Frame = -3
Query: 200 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSR 27
++ +D + P+ T+A++ P H F+ I +++ + +++W Y+ R
Sbjct: 510 VISEDGVEADPEKTKAIQDFPDHCDRAPTFQWYATINEPLRQLLKKEQQWLWYQPQER 567
>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
Length = 466
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 89 LSMQKTILPKEEWTKYEEDSRDXTPIVEQ 3
LS KT LPKE+W K E++S P V Q
Sbjct: 8 LSPPKT-LPKEQWAKREKNSEGFKPGVMQ 35
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 1 TCSTIGVXSRESSSYFVHSSLGRIVFCMESCMARTIRKFLSSTTWDGSLRSASVTSGV 174
T + V + ++SS V SLG + + +C + L++ +WD +++ V +GV
Sbjct: 188 TTKIVDVRTFDTSSNNVTLSLGGHINIVSTCCFSSDEHMLATGSWDKNIQLWDVATGV 245
>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
Length = 378
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 112 KFLSSTTWDGSLRSASVTSGVSCKQSSRNKP 204
+++ +WD SL +GV+C RN+P
Sbjct: 223 RYVIEGSWDKSLECIPQDTGVTCPTDCRNRP 253
>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
Length = 295
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 77 FAWRAVWHVQYGSFSRQQHGMEVCGVLQLH 166
F WR V Y S +R QH + CG H
Sbjct: 55 FDWRDVNGTNYASTTRNQHIPQYCGSCWAH 84
>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
Length = 1623
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 234 PFAEAVTSVNSRGSESHHGSC 296
PF A+T V+ RG++S G C
Sbjct: 1130 PFRRAITCVSRRGNQSPTGGC 1150
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 236 WAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 57
WA N G Y +++ DVT +L + H E+ F++ ++ +S+ +PK
Sbjct: 398 WAQNWDGI--YDMVQPYPDATPLDVTPSL--IKQHYTPEKMFKLAQSFFVSIGLDPMPKS 453
Query: 56 EWTK 45
W K
Sbjct: 454 FWNK 457
>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
Length = 432
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 68 GLFFAWRAVWHVQYGSFSRQQHGMEVCGVLQLH 166
G WR WH +YG+ G++ G L H
Sbjct: 310 GFMKFWRRFWHWRYGNCYIFNQGVDENGTLLAH 342
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,516
Number of Sequences: 59808
Number of extensions: 239413
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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