Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C20
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical ...    60   4e-10
AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical ...    29   1.2  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical p...    26   8.5  

>AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical
           protein T02H6.11 protein.
          Length = 130

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
 Frame = -3

Query: 254 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVVDERNFRIVRAIQ 90
           + +L K+A+ NL G  +YGL   D   E  P+VTEALRRL     HV D+R  R+ RA  
Sbjct: 19  ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78

Query: 89  LSMQKTILPKEEWTKYEEDSRDXTPIVEQ 3
           L++    LPK EWT+++++S    P +++
Sbjct: 79  LALHGEKLPKAEWTQWDQESWYLKPYLDE 107


>AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical
           protein F25E5.5 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = -3

Query: 224 LSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTK 45
           + GF K+ +L DDC  E     +   R    +  + ++ IV    L +    +   E   
Sbjct: 46  IGGFEKWPVLTDDCKIEVVKYLDLWSRCKLSICSKSDYEIVNKTALKLDCIDIQDNETWH 105

Query: 44  YEEDSRD 24
           YE    D
Sbjct: 106 YELSKED 112


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 142 FHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQN 44
           FH +LL   TS+LY+P     +K SYL  S +N
Sbjct: 199 FHSILLIA-TSLLYIPIMRHVRKFSYLPSSQKN 230


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 167 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 54
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 167 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 54
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  SLGRIVFCMESCMARTIRKFLSSTTW 135
           SL RI  C+ SC+   I  +L+ TTW
Sbjct: 403 SLTRIYQCVASCVILFISPYLTVTTW 428


>U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical
           protein C32D5.12 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  GRIVFCMESCMARTIRKFLSS 126
           G IVFCM+   A +IR F  S
Sbjct: 239 GEIVFCMDENCAHSIRDFFES 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,310,151
Number of Sequences: 27780
Number of extensions: 182080
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)