Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C17
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 283 1e-76
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 120 2e-27
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 29 6.0
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 29 6.0
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 29 6.0
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 6.0
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 6.0
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 29 6.0
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.0
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 28 7.9
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 283 bits (694), Expect = 1e-76
Identities = 132/182 (72%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Frame = -1
Query: 763 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGT-IEDKVK 587
W D+ G+KSIE+DF M +YC V+RVI HTQ KLLK RQKKAHIMEIQ+NGG + +KV
Sbjct: 136 WADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVD 195
Query: 586 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIG 407
W RE LE P PV VF+ DEMID I T RW TKKLPRKTHKGLRKVACIG
Sbjct: 196 WCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIG 255
Query: 406 AWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 227
AWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+
Sbjct: 256 AWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSIS 315
Query: 226 PM 221
PM
Sbjct: 316 PM 317
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 120 bits (288), Expect = 2e-27
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = -1
Query: 220 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 41
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 40 RFQTPA 23
RFQ PA
Sbjct: 275 RFQHPA 280
Score = 48.4 bits (110), Expect = 7e-06
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1
Query: 763 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 671
W D+ G+KSIE+DF M +YC V+RVI HTQ
Sbjct: 184 WADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 2e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -1
Query: 355 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 221
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 312 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
LDK MA + HLLS+T RNP LH++E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 295 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 170
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 59 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 75 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 309 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 211
D T +MA + HLLS+T RNP LH++E++
Sbjct: 979 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 680 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 555
PH N + T G H NPT HR S GQ R +G P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 151 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 23
K R++ +K ++H+ + K ++F+ SKF H T A
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTA 359
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,744,497
Number of Sequences: 59808
Number of extensions: 576471
Number of successful extensions: 1204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -