Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C17
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   313   8e-86
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   313   8e-86
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   308   3e-84
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    30   1.6  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.7  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   6.4  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    28   6.4  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  313 bits (769), Expect = 8e-86
 Identities = 147/247 (59%), Positives = 186/247 (75%), Gaps = 1/247 (0%)
 Frame = -1

Query: 766 EWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKV 590
           ++  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV
Sbjct: 136 QYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKV 195

Query: 589 KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACI 410
            +A    EK IP+++VF +DEMID I            +RW   +LPRKTH+GLRKVACI
Sbjct: 196 DFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255

Query: 409 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 230
           GAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +
Sbjct: 256 GAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDV 309

Query: 229 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 50
           TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S F
Sbjct: 310 TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIF 369

Query: 49  GHGRFQT 29
           GHGRFQT
Sbjct: 370 GHGRFQT 376


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  313 bits (769), Expect = 8e-86
 Identities = 147/247 (59%), Positives = 186/247 (75%), Gaps = 1/247 (0%)
 Frame = -1

Query: 766 EWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKV 590
           ++  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV
Sbjct: 136 QYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKV 195

Query: 589 KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACI 410
            +A    EK IP+++VF +DEMID I            +RW   +LPRKTH+GLRKVACI
Sbjct: 196 DFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255

Query: 409 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 230
           GAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +
Sbjct: 256 GAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDV 309

Query: 229 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 50
           TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S F
Sbjct: 310 TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIF 369

Query: 49  GHGRFQT 29
           GHGRFQT
Sbjct: 370 GHGRFQT 376


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  308 bits (756), Expect = 3e-84
 Identities = 144/245 (58%), Positives = 183/245 (74%), Gaps = 1/245 (0%)
 Frame = -1

Query: 760 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVKW 584
           + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ+NGG I  KV +
Sbjct: 138 ETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDY 197

Query: 583 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 404
           A    EK +PVD++F +DEMID I            +RW   +LPRKTH+GLRKVACIGA
Sbjct: 198 ACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA 257

Query: 403 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 224
           WHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   ++A TEYD +EK ITP
Sbjct: 258 WHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-THSAMTEYDRTEKDITP 311

Query: 223 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 44
           MGGFPHYG V  D++MIKGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GH
Sbjct: 312 MGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGH 371

Query: 43  GRFQT 29
           GRFQT
Sbjct: 372 GRFQT 376


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 533 LGKHRIDRDRFLQMFSGPFHFVLDGTT 613
           L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 352 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 200
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 232 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEK 86
           I P+   P Y  V  DF + KGC   P+K+   L     SLR H     ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDK 337


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 674 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 543
           S +  K A +EGS  G        +G  E G+  SG+ Y CRFC
Sbjct: 18  SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,585,891
Number of Sequences: 28952
Number of extensions: 397774
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)