Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C16
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_33012| Best HMM Match : DUF1388 (HMM E-Value=2.6e-18)               31   1.6  
SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 599  PLPKFDII*KKKQFLNGHSHLSVSNRPSHHIATFLKRGIIVTV 727
            P P+  +    K FL   +  SV NR  H+I   L+RGI V+V
Sbjct: 2667 PSPRLRVRFMIKVFLKTEASFSVMNRTRHNILNMLRRGINVSV 2709


>SB_33012| Best HMM Match : DUF1388 (HMM E-Value=2.6e-18)
          Length = 212

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 151 LHAELTRGLKFCKXXVRKXDRNKTNGRXDTQG--ETRARDQQPG-EGTQGR 8
           L+ + TRG    +   +   RNKT GR  T G  +T  RD+ PG + T GR
Sbjct: 83  LNRDKTRGRYKTRGRYKTLGRNKTLGRDKTPGRDKTPGRDKTPGRDKTPGR 133


>SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 555 KSKRSSFGDYFYVQHLCRNLILYEKKNSFSM 647
           +++ + F D FY QH  R L ++EK N F M
Sbjct: 63  ENEANQFWDEFYTQHQNRYLTVFEKFNIFYM 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,914
Number of Sequences: 59808
Number of extensions: 319709
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)