Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C14
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.72 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.0  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 586 ALYLNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQTY 720
           A +L + + + V VKR++  K   VG NHF L     T +DI+T+
Sbjct: 251 AWFLTEEDRKLV-VKRLRANKQG-VGNNHFKLYQFKETMLDIRTW 293


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 216 HANFKIKIFLLININFVRK 272
           HAN + K   L+NINFVRK
Sbjct: 569 HANARTKKKELLNINFVRK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,788
Number of Sequences: 5004
Number of extensions: 47458
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)