Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C14
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative (CH...    29   4.4  
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH...    28   5.8  

>At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative
           (CHX10) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 731

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 184 IVPIVARFQYRQKIKQIRTHDQNSLGYDRN*QLSILTC 71
           IVP V R  Y  + K +    ++ L  +RN  L ILTC
Sbjct: 381 IVPTVLRRMYDPRRKYVNYQKRDILHLERNSDLRILTC 418


>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
           (CHX11) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 671

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 184 IVPIVARFQYRQKIKQIRTHDQNSLGYDRN*QLSILTC 71
           IVP+V R  Y  K K +    ++ L  + N  L ILTC
Sbjct: 321 IVPMVVRSMYDPKRKYVNYQKRDILHLEANSGLRILTC 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,740
Number of Sequences: 28952
Number of extensions: 217240
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)