Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C12
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   1.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   4.5  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   4.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   5.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   7.8  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 235  DAKELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 89
            D KEL   +RE  L  + A+C +      +   G  I+N+  +WN+L  K
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 256 DKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPE 77
           D+++     KEL +     +  E   C    KKGT  +   L  +  K W EL      +
Sbjct: 143 DREQIVQVIKELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWKELQYFNVSK 202

Query: 76  XKFTAKDEK-ELRESKAEE 23
            K  + +E  +L  ++ EE
Sbjct: 203 DKLLSLEESIKLLSARLEE 221


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 349 DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 257
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 349 DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 257
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 443 PVQRYYLTHHQYEFPH 396
           P QR  L+H Q++FPH
Sbjct: 766 PQQRAILSHVQWDFPH 781


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 295 NSRLLQPYIKCILDKDRCAPDAKELKEHIRE 203
           + RL Q YI+ +LDK+  A    +LK+ +R+
Sbjct: 554 DDRLKQLYIEGVLDKEIKALKVSQLKDILRD 584


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 61  KDEKELRESKAEEHXGETT 5
           KDE E  + KAEE  G+TT
Sbjct: 405 KDEAERSKRKAEESDGKTT 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,052
Number of Sequences: 5004
Number of extensions: 31235
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)