Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C12
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0632 - 4647271-4648704 33 0.089
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636... 29 1.4
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 28 4.4
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 28 4.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 5.8
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 27 5.8
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 7.7
04_01_0618 - 8094991-8097288 27 7.7
>03_01_0632 - 4647271-4648704
Length = 477
Score = 33.5 bits (73), Expect = 0.089
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = -3
Query: 208 REALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKDEKELRESKA 29
+EA T C K TE++ TRR L+ ++ +E+ AK + KD K ++E+
Sbjct: 251 KEAGFTSCMKSTESELAETRRENARLLESQRSGRDEI-AKLRDILRQAVKDTKVVKEA-L 308
Query: 28 EEHXGETTA 2
EE GE A
Sbjct: 309 EEARGENAA 317
>10_08_1003 -
22162526-22163155,22163305-22163448,22163565-22163692,
22163794-22164066,22164416-22164689
Length = 482
Score = 29.5 bits (63), Expect = 1.4
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = -3
Query: 289 RLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKCTEAQKK---GTRRVI--GHLIN 125
++LQ I D RCAPD L +H+ EAL+ + +Q + G++ H++
Sbjct: 295 KVLQELAVSIRDHHRCAPDV--LSDHLHEALQ-DLNSAIRSQPRLFLGSKHACANSHVLM 351
Query: 124 NESKSWNELTAKYDPEXKFTAKDEKELRESKAEE 23
+ S + T P K E R +KA++
Sbjct: 352 ELNSSKHTATRTTLPSFKTDGTSLLERRNTKADQ 385
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 254 QGQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPSN 129
+G VC EG + G R R RE+ E YS C RPS+
Sbjct: 220 KGSVCVAERRREGRGEEGRR-RSRELMEMEMEMYSRCARPSH 260
>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -1
Query: 192 PNARNVPKPRRRVL 151
P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 287 TSSALHQMYPRQGQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPS 132
T+S+ + P + P R V + RDR++E RSP++ S PS
Sbjct: 265 TTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQAQSRSRSPS 316
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.5 bits (58), Expect = 5.8
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = -3
Query: 298 SNSRLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNE 119
+N R + K +K +CA K L E + +ETE K TE +K + + +
Sbjct: 249 ANKRAEEEKQKAAREK-KCANSEKSLAEKNKNLIETERKKLTE--EKSRAECLFAKLEEQ 305
Query: 118 SKSWNELTAKYDPEXKFTAKDEK 50
K +L + + E K A D+K
Sbjct: 306 KKLNEDLRVRIEVERK-NAVDQK 327
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.1 bits (57), Expect = 7.7
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Frame = -3
Query: 346 DKYTDRYDNVNLDEVLSNS--RLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKCT 173
D Y ++N D V NS +QP C+ CA + L +H + E + C
Sbjct: 346 DFYPLEHENWENDIVWGNSPTTAIQP---CLTS---CAISKESLDDHNEDQAEGYVSGCW 399
Query: 172 EAQKKGTRRVI-----GHLINNESKSWNELTAKYDPEXKFTAKDEKELRE 38
+ Q K + GH +S S+ Y P K TA++ L E
Sbjct: 400 DVQNKFHSSSVMADPFGHTEIPDSTSYRSPENSYSPLRKETAQENNSLDE 449
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 175 TEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKDEKELRESKAEEHXGE 11
TEA K+G RR G N +S + +P + K+E+E E + EE E
Sbjct: 222 TEAVKQGERREGGQFHENLERS--TVKTAIEPVVEQQKKEEEEEEEEEEEEEEEE 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,057
Number of Sequences: 37544
Number of extensions: 215671
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -