Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C12
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1315| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.28 
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)                      29   1.5  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_39951| Best HMM Match : Dehydrin (HMM E-Value=5.2)                  28   4.5  
SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)               28   4.5  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.5  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            28   4.5  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        27   6.0  
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               27   6.0  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       27   6.0  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)                 27   7.9  

>SB_1315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 190 ECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKDEKELRESKAEEHXGE 11
           E A   E +K+ T    GH +NN++K+ +     YDP       D KE++ES   E   E
Sbjct: 6   EHAYLEEMEKEDTNSYNGHQLNNQTKNHD-----YDPIHFLAGPDYKEIKESFNPEESKE 60


>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
          Length = 129

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 243 VPLTLRS*RNTSGRHSRPNARNVPKPRRRVLDVLSAI 133
           V LT    R T G HS+ N RN+   + RVL +L  I
Sbjct: 22  VILTFLWQRKTPGEHSKTNKRNMDNRKMRVLKMLLTI 58


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 247  RCAPDAKELKEHIREALETECAKCTEAQKKGTRRV 143
            +C+P+A  L + +REA +    KC +A  +   R+
Sbjct: 1608 QCSPNAATLTKALREACQLRFQKCLDAHPEAAARI 1642


>SB_39951| Best HMM Match : Dehydrin (HMM E-Value=5.2)
          Length = 225

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = -3

Query: 208 REALE--TECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKDEKELRES 35
           RE+L   T C++  + +++GT  ++  ++ ++ K+   LT  +D   ++ A+ +K  +E 
Sbjct: 130 RESLRNFTICSRIVKEKRRGTVALVPSMMTSKHKA---LTEIHDQILEYDAEKKKGKKE- 185

Query: 34  KAEEHXGETT 5
           +AE+  GE T
Sbjct: 186 QAEKAMGEET 195


>SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)
          Length = 849

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 438 TTVLSYTPSI*IPSSHSACLPFWP 367
           T V+ +TP   I  +H+ C+PFWP
Sbjct: 661 TKVVEFTPFHLI-DNHTECIPFWP 683


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 428  YLTHHQYEFPHRILPVCRFGRGSRQT*RQVHRS 330
            YL  H+  +  R+L V   GR  R+T  ++HR+
Sbjct: 4151 YLFQHEPTYIQRVLVVVTSGRPDRRTFHRIHRT 4183


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 145 HVEYPSSGLRYI-SRIRSRVPP*CVPSTP*R 234
           H+ YP S LRY+ S +R   PP   P +P R
Sbjct: 401 HLRYPPSSLRYLPSHLRYPPPPLRYPPSPLR 431


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 467 IDHKHQLAPVQRYYLTHHQYE 405
           +DHK++L+PVQR+ L    +E
Sbjct: 199 LDHKYKLSPVQRFNLKAFYFE 219


>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 215

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
 Frame = -3

Query: 283 LQPYIKCILD-KDRCAPDAKELKEHIR--EALETECAKCTEAQKKGTRRVIGHLINNESK 113
           L P  +C LD K RC P    +           T     T    + T+  +GHL    SK
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPSTTATPSTAVTSSTPPTSTSMQTTKHSVGHLQTTVSK 193

Query: 112 SWNELTAKYDPEXKFTAKDEK 50
           S  + T   +      AK E+
Sbjct: 194 SLKKGTKPKNETESVAAKAEE 214


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 331  RYDNVNLDEVLSNSR-LLQPYIKCILDK 251
            R DN+ L EVL N R LL+PY+K + ++
Sbjct: 3893 RKDNI-LHEVLKNGRELLRPYLKALFNR 3919


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -3

Query: 226  ELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKDEKE 47
            E+ +  +E  + +  +  E++K+G +   G +  +E + W E   + D   K   K E E
Sbjct: 1134 EVDKSDKEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKTEGE 1193

Query: 46   LRESKAE 26
              +++ E
Sbjct: 1194 GEKTEEE 1200


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
 Frame = -3

Query: 328  YDNVNLDEVLSNSRLL------QPYIKCILDKDRCAPDAKE-----LKEHIREALETECA 182
            + +V  D + S SRLL      Q     ++++   APD K      LK+H+ +ALE E  
Sbjct: 1073 HSSVTGDALFSRSRLLTESTGGQSPFGVVVERLNIAPDLKPDSPSMLKQHL-QALEVELE 1131

Query: 181  KCTEAQ 164
             CT +Q
Sbjct: 1132 HCTSSQ 1137


>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
          Length = 197

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 166 QKKGTRRVIGHLINNES--KSWNELTAKYDPEXKFTAKDEKELRESKAEEH 20
           Q +G  R+  H + ++   KSW +   + + E      +E+ L++ + EEH
Sbjct: 104 QLRGLIRIYDHRMQDQPRRKSWEDTPEEDEEEDDENLTEEERLKKKEFEEH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,489
Number of Sequences: 59808
Number of extensions: 267177
Number of successful extensions: 768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)