Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C12
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 33 0.099
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 28 3.7
At5g45480.1 68418.m05587 expressed protein contains Pfam domain,... 27 4.9
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 27 4.9
At1g51915.1 68414.m05852 cryptdin protein-related contains weak ... 27 6.5
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 8.6
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 27 8.6
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 27 8.6
At4g17220.1 68417.m02590 expressed protein 27 8.6
At3g50370.1 68416.m05508 expressed protein 27 8.6
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 33.1 bits (72), Expect = 0.099
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Frame = -3
Query: 349 DDKYTDRYDNVNLDEVLS-NSRLLQPYIKCILDKDRCAPDA-KELKEHIREALETECAKC 176
D K + V LD+V++ N R L+ + + +R A + E++++ EALE E KC
Sbjct: 413 DYKSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNFAEALEKEKLKC 472
Query: 175 ----TEAQKKGTRRVIGHLINNESKSWN-----ELTAKYDPEXKFTAKDEKELRESKAEE 23
E+ KK ++I + N+E+ N +TA K + ++E +LR+S EE
Sbjct: 473 QMEYMESVKKLEEKLISNQRNHENGKRNGEVNGVVTASEFTRLKESLENEMKLRKSAEEE 532
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 253 KDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYD 83
+D APD+ EL E C E+++ + L+ NE SW + YD
Sbjct: 118 RDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYD 174
>At5g45480.1 68418.m05587 expressed protein contains Pfam domain,
PF04578: Protein of unknown function, DUF594
Length = 877
Score = 27.5 bits (58), Expect = 4.9
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -3
Query: 346 DKYTDRYDNVNLDEVLSNSRLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKC--T 173
++Y + Y N EV + S P++K IL++ + K K H E L+ +K
Sbjct: 396 EEYDECYKNTQSHEVPNTSTKKTPFLKRILNRILRVRELKTEKSH--EVLDKSTSKIPGQ 453
Query: 172 EAQKKGTRRVIGHLINNES---KSWNE 101
E K + + H + + S + W+E
Sbjct: 454 EVPDKSAKTIPCHKVLDTSFMYRRWSE 480
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 244 CAPDAKELKEHIR-EALETECAKCTEAQKKGTRRVIGHLINNESKS 110
C P EL H R E + C K GT+ V+GH+ ++ S
Sbjct: 462 CKPK-DELSRHFRGEESGISSSPCQITLKSGTKHVLGHICDDTGSS 506
>At1g51915.1 68414.m05852 cryptdin protein-related contains weak
similarity to Swiss-Prot:P17533 cryptdin-related protein
1C precursor (CRS1C) [Mus musculus]
Length = 67
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 181 SRIRSRVPP*CVPSTP*RQGHTCPCR 258
+R+ RV P CV P +G CPCR
Sbjct: 37 TRMLRRVCPSCVCCAPAPRGACCPCR 62
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 26.6 bits (56), Expect = 8.6
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = -3
Query: 256 DKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPE 77
DK++ A D KE ++ +E E + + E +KK + E K E K E
Sbjct: 67 DKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDK-------LEKEKKD-KERKEKERKE 118
Query: 76 XKFTAKDEKELRESKA 29
+ AK++K+ ES+A
Sbjct: 119 KERKAKEKKDKEESEA 134
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 282 FSLTSNVSSTRTGVPLTLRS*RNTSGRHSRPNARNVPKPRRRVL 151
F S+ S+T + P ++ N++ ++P ARNV PR R +
Sbjct: 300 FKSDSSNSNTSSAKPKAVKL--NSTSSAAKPKARNVVSPRSRAM 341
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 259 LDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYD 83
+++D APD+ EL E + E+++ + LI NES SW + YD
Sbjct: 114 VERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYD 172
>At4g17220.1 68417.m02590 expressed protein
Length = 513
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = -3
Query: 235 DAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPEXKFTAKD 56
D KEL+ E + + +A ++ RRV H +++S + A + + K +
Sbjct: 69 DQKELERKKLEEEKEDALAAQDAAEEALRRVYTHQQDDDSLPLESIIAPLESQIKIHKHE 128
Query: 55 EKELRESK 32
L+E K
Sbjct: 129 ISALQEDK 136
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 26.6 bits (56), Expect = 8.6
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -3
Query: 262 ILDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYD 83
+ K + A E + +RE+ E E + + Q++ RR+I E + EL A+ +
Sbjct: 448 VTKKKKEALKQTEFHDPVRESFEAELERVQKMQEEERRRII-----EEQERVIEL-ARTE 501
Query: 82 PEXKFTAKDEKELRESKAEEHXGE 11
E + E++ R+ + EE E
Sbjct: 502 EEERLRLAREQDERQRRLEEEARE 525
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,030,487
Number of Sequences: 28952
Number of extensions: 169797
Number of successful extensions: 454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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