BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C11
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 41 2e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.049
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.049
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.20
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 31 0.20
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.46
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.80
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.1
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 5.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.9
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 9.9
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 9.9
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 9.9
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 9.9
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 25 9.9
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 9.9
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 40.7 bits (91), Expect = 2e-04
Identities = 35/103 (33%), Positives = 50/103 (48%)
Frame = +1
Query: 82 GTRLIRDTFIKTPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKV 261
GTR FI + + S+SS++ S+ P+++ + SS S SS SSS S
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSS--PSSSSSKSSSS-SKSSSSSSSSSKSSSSSSS 194
Query: 262 SFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSA 390
S K S S++ S SSS+ SKF S + S P S S+
Sbjct: 195 SSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 237
Score = 29.5 bits (63), Expect = 0.46
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Frame = +1
Query: 130 LSASSTTISTGLCPTNTFLRISSQYSF-------SSVKLSSSGCPKCCSKVSFKCRVGSR 288
LS S T ST + P+ R SS Y SS SSS P S S S
Sbjct: 121 LSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSS 180
Query: 289 HWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSA 390
S + S SSS SK S +S+ S S+
Sbjct: 181 SSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSS 214
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.049
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Frame = +1
Query: 115 TPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 294
T + L++SST +T PT++ L SS S S S++ S ++ S
Sbjct: 86 TSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSIT 145
Query: 295 SRTLGSRS--SSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLASLYWLARYLMRK 468
S +L S S SS + S S ++ P S ++ L++ N + +S LA +
Sbjct: 146 SSSLASSSTTSSSLASSSTN-STTSATPTSSATSSSLSSTAASNSATSSS--LASSSLNS 202
Query: 469 AALVLAEGSSCASAA 513
A SS +S A
Sbjct: 203 TTSATATSSSLSSTA 217
Score = 25.4 bits (53), Expect = 7.5
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 115 TPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 294
T + L++SST +T PT++ ++ S SS S+S + S +
Sbjct: 154 TTSSSLASSSTNSTTSATPTSS----ATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 295 SRTLGS--RSSSRVQSKFRRCSLVASRPPLSCSAIVLTTL 408
S +L S S+S S SL ++ + S+ + +T+
Sbjct: 210 SSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTV 249
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.7 bits (71), Expect = 0.049
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +1
Query: 124 TYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRT 303
++ +++S++ +T PTNT S+ + S+ SSSG P +K S ++GS S T
Sbjct: 3726 SHATSTSSSFTTSHLPTNTLA--STFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLT 3783
Query: 304 LGSRS 318
L S S
Sbjct: 3784 LSSSS 3788
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.20
Identities = 41/167 (24%), Positives = 69/167 (41%)
Frame = +1
Query: 115 TPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 294
+P + S S++ S+ PT+T ISS S SS S+ S SF S
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS-- 339
Query: 295 SRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLASLYWLARYLMRKAA 474
S T+ S SSS S F + +S+ S S+ V ++ + +L S + ++
Sbjct: 340 SSTISSSSSSPSSSSF-SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398
Query: 475 LVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTSAS 615
+ S +S++ + P ++ H SR + L+S S
Sbjct: 399 HSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLS 445
Score = 26.2 bits (55), Expect = 4.3
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 312
S+SST S+ L T++ SS S +S LSSS S S + S S + S
Sbjct: 225 SSSSTLTSSSL-STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIIS---SSSSSS 280
Query: 313 RSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLASLYWLARYLMRKAALVLAEG 492
S + S S +S P + S I ++ + S +S L+ M ++ +
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTI--SSSSSSSSSFSST--LSSSSMSSSSSFSSSP 336
Query: 493 SSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTSASPCSD-CTKVSXTFSRPYS 666
+S +S ++ P +S S+ + +S+S S T S + SRP S
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPAS 395
Score = 25.8 bits (54), Expect = 5.6
Identities = 28/88 (31%), Positives = 37/88 (42%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 312
S SS+T S+ PT+T SS Y SS +SSS P S + S + S
Sbjct: 191 STSSSTFSSA-APTST----SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245
Query: 313 RSSSRVQSKFRRCSLVASRPPLSCSAIV 396
SSS S S + S S+I+
Sbjct: 246 SSSSTSSSLSSSSSSSTASSSSSSSSII 273
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 30.7 bits (66), Expect = 0.20
Identities = 33/110 (30%), Positives = 53/110 (48%)
Frame = +1
Query: 106 FIKTPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGS 285
F+ T +Y SAS++ ST + + + + SS + SS K SSS + S S R GS
Sbjct: 496 FLGTATSYSSASASYPSTSMSASLSSVHTSS--ATSSSKSSSSSSSRSGSSSSSSSRSGS 553
Query: 286 RHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLAS 435
T S SS + S + S+ S S S++ +T+ + + S +S
Sbjct: 554 -----TSSSGSSHTITSTSQ--SVHTSGSSTSTSSVAVTSTAYSSSSSSS 596
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.46
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +1
Query: 82 GTRLIRDTFIKTPRTYLSASSTTI---STGLCPTNTFLRISSQYSFSSVKLSSSGCPKCC 252
G+ I T TP + + +S T S+ PT++ SS + S +SSS P
Sbjct: 514 GSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTF 573
Query: 253 SKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCS 354
S VS + S T S SSS S F S
Sbjct: 574 SSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAS 607
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.80
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = +1
Query: 58 IWWEH*VHGTRLIRDTFIKTPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSG 237
++W + G +++ T + + ++SS++ S T T SS S SS SSS
Sbjct: 111 LYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSS 170
Query: 238 CPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVAS 366
S S S S + S SSS S + +S
Sbjct: 171 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSS 213
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 312
S+SS++ S+ +++ SS S SS SSS S V S H S + S
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS 225
Query: 313 RSSS 324
SSS
Sbjct: 226 SSSS 229
Score = 27.1 bits (57), Expect = 2.4
Identities = 27/93 (29%), Positives = 36/93 (38%)
Frame = +1
Query: 124 TYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRT 303
T S SS++ S+ +++ SS S SS SSS S S S
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210
Query: 304 LGSRSSSRVQSKFRRCSLVASRPPLSCSAIVLT 402
S SSS S S +S P S S+ + T
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
Score = 25.8 bits (54), Expect = 5.6
Identities = 28/101 (27%), Positives = 41/101 (40%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 312
S+SS++ S+ +++ SS S SS SSS S S S S + S
Sbjct: 163 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSS 222
Query: 313 RSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLAS 435
SSS S R S + +S S + T + S +S
Sbjct: 223 SSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSS 263
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 312
S+SS+ +S+ +++ ++ S SS SSS K S S + SR SRT
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSS---KSSSRSSSRTTSH 179
Query: 313 RSSSRVQSKFR 345
R++S S +R
Sbjct: 180 RTTSHKSSSYR 190
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 629 QSEQGEALVKCLYALSCGCREYSPACRSLV 540
++E+ E +KCL L YSP R+L+
Sbjct: 93 ETEKSECFIKCLLLLILSLGNYSPYSRNLL 122
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 463 RKAALVLAEGSSCASAAPNAPHPPRDTS 546
RK V +EG S A+A NA H P T+
Sbjct: 114 RKIRCVYSEGPSTANAHANAHHQPAQTT 141
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.2
Identities = 32/108 (29%), Positives = 46/108 (42%)
Frame = +1
Query: 115 TPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 294
TP T S S T ST + T+T R S+ ++ SS +S+S S SF
Sbjct: 623 TPITGTSTSKVTSSTSIPLTSTN-RTSTTFT-SSTSISTSSSSTATSSTSF--------- 671
Query: 295 SRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLASL 438
S SSS + S V++ PP + TT + SL+S+
Sbjct: 672 ----ASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSI 715
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 296 DQCRDPTLHLKETLEQHLGHPELESFTEEKEY 201
D RD +L + L H HPE E KEY
Sbjct: 106 DLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEY 137
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 175 NTFLRISSQYSFSSVKLSSS 234
N+ ISS+Y+F VK SSS
Sbjct: 615 NSLQNISSEYNFPGVKTSSS 634
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 126 LSIGFFN-HDLHWLMPDKHLPEDLFTILLFF 215
LSI ++ D+H L PDKH ++ IL F
Sbjct: 1160 LSILYYGIRDVHTLFPDKHFRGNIENILTDF 1190
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.9
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 LSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSR-TL 306
LS + +S CP TF S SFS+ S + S S K ++H S+ +L
Sbjct: 84 LSDDVSVLSFLDCPLTTFETAPSIASFSNSAADVSSHSRSSSSWSAKLSRFTKHASKPSL 143
Query: 307 GSRSSSRVQSK 339
S SS SK
Sbjct: 144 SSNSSDSSFSK 154
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 217 RKKRSIVKRSSGRCLSGISQWRSWLKK 137
R++RS+V + + C+S + WLKK
Sbjct: 97 RRRRSVVSKEALSCISLEIPYIKWLKK 123
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 491 PSARTKAAFLIRYLASQYSDAKEQFI 414
PS++ A FL+++ +Y D++E I
Sbjct: 10 PSSKVTARFLVKFCFIEYQDSQEPCI 35
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 475 LVLAEGSSCASAAPNAPHPPRDTSERHA--GEYSRQ 576
LV A SC N HP R+TS H G Y RQ
Sbjct: 222 LVDAWQKSCLQNHKNLDHPSRETSVVHRIFGGYLRQ 257
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 81 RHKIDSGHFH*DPSHLSIGFFNHDLHWLMPDKH-LPEDLFTILLF 212
+ ++D+G H PSH S F++ + L D + L + LF I+ +
Sbjct: 335 KSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQY 379
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 269 LKETLEQHLGH---PELESFTEEKEYCEEILRKVFVGHKPV 156
L +L+Q + H E ES + ++ IL+ +FVGHK +
Sbjct: 159 LTASLDQKIFHWVIEEPESMLDAEKKSSGILQTLFVGHKDI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,956
Number of Sequences: 5004
Number of extensions: 43700
Number of successful extensions: 186
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -