Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C11
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          34   0.091
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)             31   1.1  
SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_6035| Best HMM Match : TSP_1 (HMM E-Value=0.046)                    29   3.4  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  28   6.0  
SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)                     28   6.0  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       28   6.0  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                28   7.9  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   7.9  
SB_45874| Best HMM Match : TIR (HMM E-Value=0.43)                      28   7.9  

>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 115 TPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCP-KCCSKVSFKCRVGS 285
           TP T  S S T IS G   T T    S+  S +SV + S+ C    CS+   KC VGS
Sbjct: 653 TP-TLTSVSPTNISAGNELTLTGTGFSTDCSKNSVLIGSTNCSVTTCSETEIKCTVGS 709


>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
          Length = 479

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 458 RYLASQYSDAKEQFIQHNVVRTIAEQLR 375
           R   +QY++ K++++QHN+  T A+QLR
Sbjct: 78  RVSTTQYNNCKQEYLQHNIYNT-AQQLR 104


>SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 469 AALVLAEGSSCASAAPNAPHP 531
           A +V A G +C  AA NAPHP
Sbjct: 38  ACVVNASGPACGLAAANAPHP 58


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/85 (30%), Positives = 37/85 (43%)
 Frame = +1

Query: 181  FLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLV 360
            F+R  S + FSS ++S S      S  S + R     W R  G   SS V         V
Sbjct: 795  FMRSLSGFRFSSSRVSRSSSSISDSLSSLRSRAS---WRRLSGVLESSMVSLS------V 845

Query: 361  ASRPPLSCSAIVLTTLCWMNCSLAS 435
            A+ P   CS+  L+   WM  S+++
Sbjct: 846  ATTP---CSSWTLSVFSWMTASISA 867


>SB_6035| Best HMM Match : TSP_1 (HMM E-Value=0.046)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +1

Query: 148 TISTGLCPTNTFLRIS-----SQYSFSSVK-LSSSGCPKCCSKVSFKCRVGSRHWSRTLG 309
           T+ T LC  N  +R+S     SQYS  S + +SS   P+        C +  R  S+T G
Sbjct: 17  TVPTALCHLNVIIRVSKRRIISQYSSESFECMSSQTEPRIFEVHQRSCVLFFRQCSKTCG 76

Query: 310 SRSSSRVQSKFRR 348
               +R    F R
Sbjct: 77  RGLQTRTVECFDR 89


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 127  YLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGC 240
            Y+  S +   TG+  TNTFL  S   +  + +L SSGC
Sbjct: 2055 YILQSLSPYITGVTDTNTFLFDSCNQTSCNQELPSSGC 2092


>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
 Frame = +1

Query: 91  LIRDTFIKTPRTYLSASSTTISTGLCPTN-TFLRISSQ--YSFSSVKLSSSGCPKCCSKV 261
           L+ +    T  +Y+      +S+  C  N T L+      Y F      SS   KC  K+
Sbjct: 45  LLNNLLCDTRVSYVFPDCNHVSSKKCHVNPTQLKCMEMVDYHFPGCNHPSSKKKKCSEKI 104

Query: 262 SFKCRVGSRHWSRTLGSRSSSRVQSKFRR--CSLVASRPPLSCSAIVLTTLCWMNCS 426
           ++KC    +   +  G       Q K     C++   R    C     T LC  +CS
Sbjct: 105 TWKCDKKEKFTKKDCGHELFRICQQKEEDVVCNVPCGRNRPGCGH-PCTNLCGEDCS 160


>SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)
          Length = 277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 154 STGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKC 273
           S  LCP     R++++ S   + +S  G     ++VSF C
Sbjct: 78  SCNLCPERDSKRLAARVSIDFISVSRKGLKTKAARVSFDC 117


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
 Frame = -1

Query: 311  DPRVLDQCRDPTLHLKETLE-QHLGHPELESFTEEKEYCEEILR--------KVFVGH-K 162
            D R + + R      K  L  QH    E+ESF E +++ E + R        K+F    K
Sbjct: 953  DNRAVQKLRREVEKAKRALSTQHQARVEIESFFEGEDFSEMLTRARFEELNAKLFKSTLK 1012

Query: 161  PVEIVVEEAD 132
            PV+ V+E+AD
Sbjct: 1013 PVQKVLEDAD 1022


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +1

Query: 262 SFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAIVLTTLCWMNCSLASLY 441
           ++KCR GS   + T   + + +   K  RCS+  S    +     + T   + C  +SL 
Sbjct: 34  AWKCRNGSTICNLTKEFQPTDKDPDKMLRCSIPRSEWEFTTPYTSIVTEWDLVCEYSSLS 93

Query: 442 WLARYLM 462
           W    +M
Sbjct: 94  WATNSIM 100


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = +1

Query: 139 SSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGC----PKCCSKVSFKCRVG-SRHWSRT 303
           SSTTI  G+CPTN+   +    S SS   S++ C     +C +  S    VG +   +  
Sbjct: 84  SSTTI--GVCPTNSCTNLKDSTSGSSTISSATICFGPTNRCTTTSSTTISVGPTNSCTNV 141

Query: 304 LGSRSSSRVQSKFRRCSLVASRPPLSC 384
             S ++S   +    C ++      SC
Sbjct: 142 KDSTNTSGSSTTIDVCPIITCTTTSSC 168


>SB_45874| Best HMM Match : TIR (HMM E-Value=0.43)
          Length = 876

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/131 (20%), Positives = 51/131 (38%)
 Frame = +1

Query: 205 SFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
           S   VK       K  S+ + + R+ SR           +  +  F +C+ VA+  PL  
Sbjct: 208 SIPDVKQYEDPETKTISQFTVRARLLSRIIGALANLAKPAVNKRHFNKCNAVATLVPLMK 267

Query: 385 SAIVLTTLCWMNCSLASLYWLARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGE 564
           S++      ++  SL  + +L      +  +    G +C+S  P  P PP     + +G 
Sbjct: 268 SSVY----AYVIKSLFCIVFLLDEDNNELCMA-GSGGTCSSGPPPPPPPPTSIGPKPSGH 322

Query: 565 YSRQPHDKAYR 597
           +    +   Y+
Sbjct: 323 HVMLSYQWGYQ 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,546
Number of Sequences: 59808
Number of extensions: 365695
Number of successful extensions: 1639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)