Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C11
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    32   1.6  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    32   1.6  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    32   1.6  
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.               30   6.5  
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase...    30   6.5  
BC113452-1|AAI13453.2|  132|Homo sapiens chromosome 22 open read...    30   8.6  
BC113450-1|AAI13451.2|  132|Homo sapiens chromosome 22 open read...    30   8.6  
AK093880-1|BAC04241.1|  132|Homo sapiens protein ( Homo sapiens ...    30   8.6  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = +1

Query: 232  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = +1

Query: 232  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = +1

Query: 232  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
          Length = 1203

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 445  LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTSASPCS 624
            LA +++  A  +++  SSC+S+  + P  P D         + Q   KAY +LT   P  
Sbjct: 938  LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 996

Query: 625  D 627
            D
Sbjct: 997  D 997


>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase-like
            family, member 4 protein.
          Length = 1199

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 445  LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTSASPCS 624
            LA +++  A  +++  SSC+S+  + P  P D         + Q   KAY +LT   P  
Sbjct: 934  LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 992

Query: 625  D 627
            D
Sbjct: 993  D 993


>BC113452-1|AAI13453.2|  132|Homo sapiens chromosome 22 open reading
           frame 15 protein.
          Length = 132

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 235 GCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
           G P+   ++S    VG  +W + +G+R     QS   R   V+S PP SC
Sbjct: 84  GLPEELRRLSGLSSVG-HNWRKRMGTRRGRHEQSPTSRPRKVSSLPPRSC 132


>BC113450-1|AAI13451.2|  132|Homo sapiens chromosome 22 open reading
           frame 15 protein.
          Length = 132

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 235 GCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
           G P+   ++S    VG  +W + +G+R     QS   R   V+S PP SC
Sbjct: 84  GLPEELRRLSGLSSVG-HNWRKRMGTRRGRHEQSPTSRPRKVSSLPPRSC 132


>AK093880-1|BAC04241.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36561 fis, clone TRACH2009348. ).
          Length = 132

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 235 GCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 384
           G P+   ++S    VG  +W + +G+R     QS   R   V+S PP SC
Sbjct: 84  GLPEELRRLSGLSSVG-HNWRKRMGTRRGRHEQSPTSRPRKVSSLPPRSC 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,681,093
Number of Sequences: 237096
Number of extensions: 1799646
Number of successful extensions: 5834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5820
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)