Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C11
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 30 1.2
At2g43270.1 68415.m05378 F-box family protein contains Pfam PF00... 29 2.1
At2g11830.1 68415.m01271 hypothetical protein 29 2.8
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 28 4.9
At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi... 28 6.5
At5g16410.1 68418.m01918 transferase family protein low similari... 28 6.5
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 27 8.5
At1g14740.1 68414.m01762 expressed protein 27 8.5
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr... 27 8.5
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 133 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKV 261
+ S+T+ STG ++T +Y + S +GC KC K+
Sbjct: 91 AGSNTSTSTGTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKI 133
>At2g43270.1 68415.m05378 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 387
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 304 LGSRSSSRVQSKFRRCSLVASRPPLSCSAIV-LTTLCWMNCSLASLYWLARY 456
LG +Q + C + A+RP L+C +V + W+N S L R+
Sbjct: 62 LGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCIPAPGWINVLNPSTRQLRRF 113
>At2g11830.1 68415.m01271 hypothetical protein
Length = 156
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 212 EKEYCEEILRKVFVGH-KPVEIVVEEADR*VRGVLMKVSRINLVPWTQCSHQI*WA 48
E E C +L++VF+ H KPV IV ++ + + +K +R +L P + WA
Sbjct: 24 ETEKCVVVLKRVFINHYKPVRIVTQDL---IHHLGLKSARRSLSPLHAEFDSLLWA 76
>At5g42950.1 68418.m05236 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1714
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 481 LAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPH 582
++ G S ++APN HPP S++ PH
Sbjct: 262 MSPGGSIFTSAPNQSHPPGSASDKGESGPGEPPH 295
>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 487
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -1
Query: 479 TKAAFLIRYLASQYSDAKEQFIQHNVVRTIAEQLRGGRDATSEHXXXXXXXXXXXLDPRV 300
T A L RY S + + + H V+R ++ + GG D E+ L +V
Sbjct: 15 TSTAKLTRYFCSHHLVDRSETALHEVIRIVSSPV-GGLDDLEENLNQVSVSPSSNLVTQV 73
Query: 299 LDQCRDPT 276
++ C++ T
Sbjct: 74 IESCKNET 81
>At5g16410.1 68418.m01918 transferase family protein low similarity
to anthranilate N-hydroxycinnamoyl/benzoyltransferase
Dianthus caryophyllus GI:3288180, GI:2239091; contains
Pfam profile PF02458 transferase family
Length = 480
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 167 HKPVEIVVEEADR*VRGVLMKVSRINLVPWTQCSHQI 57
HKP+ V +E + + + K +NL+ W + S I
Sbjct: 344 HKPLSWVTDEVHKLLESTMTKDHFLNLIDWVETSRPI 380
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 166 CPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCR 276
CP++T L S+Q SS SSS P S SF C+
Sbjct: 69 CPSSTHLSCSTQPPSSSAASSSSSAPPPAS--SFTCQ 103
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/79 (26%), Positives = 30/79 (37%)
Frame = +1
Query: 109 IKTPRTYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSR 288
+K PR S +TT + T S YS+S + C + F C VG
Sbjct: 166 VKRPRVVTSERTTTSFSN---DFTATAPSMSYSYSHPFSHNISCSMTRNSTDFDCSVGKD 222
Query: 289 HWSRTLGSRSSSRVQSKFR 345
G ++ V S+FR
Sbjct: 223 DHIWCAGEGTNGSVHSRFR 241
>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
protein contains Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 830
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 166 ISQWRSWLKKPIDKCE 119
I +W++WLK P KC+
Sbjct: 273 IQEWKTWLKVPSTKCD 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,844
Number of Sequences: 28952
Number of extensions: 244357
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -