Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C10
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)                 30   1.3  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         30   1.7  
SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)                  29   4.0  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              28   5.2  

>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 220 DEAFFC-YDIFSKILNFKWLSHGKLQKCRF 306
           D+AF C  +I  KI +F WL H KL K ++
Sbjct: 199 DKAFLCPTNILHKIGSFDWLGHTKLTKLKY 228


>SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)
          Length = 455

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
 Frame = +3

Query: 282 WQVAKMSLQPNTF------SPFDILGTFLLL 356
           W VAK++++PNTF       PFDI   F +L
Sbjct: 92  WSVAKLAVRPNTFRYLVFYCPFDIFNKFFML 122


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 TISRVN-WFWFEIGREVVPNRAGPPALPSIAVR 463
           T+S +  W W+E+  +VV +R GP + PS+ VR
Sbjct: 521 TVSNLEIWTWYEVTVQVVTSRPGPRS-PSVFVR 552


>SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 241 DIFS---KILNFKWLSHGKLQKCRFNQIPFHLS 330
           +IFS   K L F W+  GK++   FN +PF L+
Sbjct: 217 EIFSDHRKYLGFSWIMEGKVRYFVFNVLPFGLT 249


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 326 FRYIRHIFIAGDGNTISRVNWFWFEIGREVVPNRAGPPAL 445
           FR    + +  +GN+     W   + GREVV  R G P L
Sbjct: 596 FRRFEEVLLDDEGNSQPPPKWVIRDSGREVVQLRNGNPGL 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,019
Number of Sequences: 59808
Number of extensions: 338996
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)