Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C10
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.8  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNY 100


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNY 100


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNRTIHNNNNYKYNY 100


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNY 100


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNY 100


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNY 100


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 402 ISNQNQLTREIVFPSPAIKMCL 337
           +SN N+L R +V  S  +++C+
Sbjct: 37  LSNYNKLVRPVVNTSDVLRVCI 58


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 402 ISNQNQLTREIVFPSPAIKMCL 337
           +SN N+L R +V  S  +++C+
Sbjct: 37  LSNYNKLVRPVVNTSDVLRVCI 58


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYNFRY 62
           ++ +LS  T+ NN NY + Y
Sbjct: 314 IISSLSNKTIHNNNNYKYNY 333


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYN 53
           ++ +LS  T+ NN NYN
Sbjct: 81  IISSLSNKTIHNNNNYN 97


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYN 53
           ++ +LS  T+ NN NYN
Sbjct: 81  IISSLSNKTIHNNNNYN 97


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYN 53
           ++ +LS  T+ NN NYN
Sbjct: 314 IISSLSNKTIHNNNNYN 330


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   LVGALSXCTMINNKNYN 53
           ++ +LS  T+ NN NYN
Sbjct: 303 IISSLSNKTIHNNNNYN 319


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 380 VNWFWFEIGREVVPNR 427
           ++WF F +G + +P R
Sbjct: 216 LSWFSFWLGLDAIPGR 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,800
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)