Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C10
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79250.1 68414.m09239 protein kinase, putative similar to vir...    29   2.4  
At2g26310.1 68415.m03157 expressed protein                             29   3.2  
At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to t...    27   9.9  

>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
           symptom modulation protein/dual-specificity protein
           kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
          Length = 555

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 266 LNGS---LMASCKNVASTKYLFTFRYIRHIFIAGDGNTISRVNWFWFEI 403
           +NGS   LMA   NV S  ++ T  Y+    I G+G+  S V+W+ F I
Sbjct: 361 VNGSMPELMAEPTNVKSMSFVGTHEYLAPEIIRGEGHG-SAVDWWTFGI 408


>At2g26310.1 68415.m03157 expressed protein
          Length = 398

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 205 PIEIADEAFFCYDIFSKILNFKWLSHGKLQK 297
           P  +A EAF C   F+  L   W SHG LQK
Sbjct: 27  PGSLAFEAFSCISKFTGAL-LCWFSHGNLQK 56


>At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to to
           plant beta-1,3-glucanase bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 345

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 FIAGDGNTISRVNWFWFEIGREVVPNRAGPPALP 448
           F A   + ++ VN  +  +G EV+P   GP  LP
Sbjct: 107 FAANIESYLADVNITFITVGNEVIPGPIGPQVLP 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,912
Number of Sequences: 28952
Number of extensions: 249128
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)