Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C08
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.7  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   8.5  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 25  GIVFKVVCKCSALLLPWRSRCVFKMALFHFIPFRKHNTNMPHNRLPVSINLLNSMQYLCS 204
           G++ +V  + +A+L+  R +CVF         F + +    H+R  V  N  N + +L S
Sbjct: 553 GLLGEVRRRIAAVLIVHRHQCVFAYVRLRLFAFARLHYPTLHSRRVVDTNNANRLHFLTS 612


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +2

Query: 359 VVYSTKNS*HLHHKAHNEEHSRLSAVH*H*NKINVHLQLLNHRIH*RKSEAVYKII 526
           V+Y   +  H HH  H+ +H+     H H +  + H    +H  H   +  +   I
Sbjct: 205 VIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHHNNNTIITTI 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,989
Number of Sequences: 59808
Number of extensions: 365642
Number of successful extensions: 746
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)