Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C07
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        111   2e-25
03_04_0027 + 16593133-16593573                                        108   2e-24
02_01_0563 + 4134954-4135388                                          106   7e-24
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   4.9  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   4.9  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   6.5  
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    27   8.6  
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773...    27   8.6  
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859...    27   8.6  
01_06_0884 + 32715963-32716284,32716837-32717567                       27   8.6  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  111 bits (267), Expect = 2e-25
 Identities = 55/127 (43%), Positives = 75/127 (59%)
 Frame = -2

Query: 387 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 208
           M TS +K RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 207 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 28
           FH  +NK + P +N+++LW++V  +   + A A  GK P++++ +           LP++
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118

Query: 27  PVXVKAK 7
           P+ VKAK
Sbjct: 119 PIVVKAK 125


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  108 bits (260), Expect = 2e-24
 Identities = 57/128 (44%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
 Frame = -2

Query: 387 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 208
           M T  KK RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 207 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 31
           FH   N+  CP +N+++LW++V      K A A  GK PVI++ +             P+
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117

Query: 30  QPVXVKAK 7
           +P+ VKAK
Sbjct: 118 RPIVVKAK 125


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  106 bits (255), Expect = 7e-24
 Identities = 56/128 (43%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
 Frame = -2

Query: 387 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 208
           M T  KK RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 207 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 31
           FH   N+  CP +N+++LW++V  +     A A  GK PVI++ +             P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115

Query: 30  QPVXVKAK 7
           +P+ VKAK
Sbjct: 116 RPIVVKAK 123


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 261 FCDGAHHQHYHDLLDAYG 314
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 278 PPALPRPPGCLRCFPIRPCP 337
           PPA P PP  L C P+ P P
Sbjct: 10  PPAPPSPPPALPCDPMPPPP 29


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 275 SPP-ALPRPPGCLRCFPIRPCP 337
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 120 TSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCP 254
           T+ SSV    ++A+   KL +   SF +GN S+   ++  +G+ P
Sbjct: 325 TTDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAP 369


>03_05_0422 -
           24076917-24077125,24077209-24077266,24077350-24077399,
           24077494-24077754,24077837-24078230,24081256-24081366,
           24082255-24082596
          Length = 474

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 282 GGEHHHRINMDKYH 241
           GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326


>02_05_0267 -
           27284781-27284957,27285082-27285126,27285858-27285923,
           27286043-27286114,27286225-27286350,27286563-27287217,
           27287313-27287521
          Length = 449

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 CDGAHHQHYHDLLDAYGAFRYDHVRD*HDLSAS-*SSFLR 380
           C G HH H+H  L   G+  +   ++ H+L+ S  +SFL+
Sbjct: 165 CYGEHHHHHHHQLTKEGSCNHQQ-QEQHELAISPMASFLQ 203


>01_06_0884 + 32715963-32716284,32716837-32717567
          Length = 350

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 269 WCSPPALPRPPGCLRCFP 322
           WC  PA+P+     RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,654
Number of Sequences: 37544
Number of extensions: 238994
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)