Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C06
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.84 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   1.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   1.9  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   3.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   5.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   5.9  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    25   7.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
 Frame = -2

Query: 416 VMKCYFSSYLVQNGTDDQQ----NEPTNLLDLQFYSPEY------LSVITTHPENEENTI 267
           VM CYF++YL     DD+     N P+   +L+    ++       +      +N +  +
Sbjct: 155 VMSCYFTAYLAMESVDDRSTIDLNSPSKGKELELTCQKFADFERSFTFFCREYQNSDTIL 214

Query: 266 ----FIQVPVKHLLENSTELNIN-TKSCIFTDRSVKKDIAPLL 153
                I   +KH  EN+ +L++    S + +D    K ++ L+
Sbjct: 215 QHHPLILSTIKHAEENNLDLSVRLLPSKVLSDSEFYKSLSNLV 257


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 359 NEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNI 213
           N P +L+ L+ Y       IT  PE+++N  FI    K  +ENS  L I
Sbjct: 444 NSPDDLISLEDY-------ITKMPEHQKNIYFITGESKQAVENSPFLEI 485


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 176  KKDIAPLLEQNVYKVLEKMDGSRLAVSGGRK-VAVILSKSSRKVRVF 39
            ++D+AP+LE+     L+ M+G   A    RK V  I+  + +++R F
Sbjct: 982  RRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSF 1028


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 332 QFYSP-EYLSVITTHPENEENTIFIQVP 252
           +FYS  EYL  + +HPE + +   I +P
Sbjct: 102 EFYSADEYLEYLDSHPEEKPDAYIIGIP 129


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 398 SSYLVQNGTDDQQNEPTNLLDLQFYSPE 315
           S  L +NG +D+ N P++L   +FY  E
Sbjct: 22  SRNLERNGLEDEANAPSDLSGQKFYMTE 49


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 239 LENSTELNINTKSCIFTDRSVKKDIAPLLEQN 144
           L +  +L++NT +CIF   SV +D   +++QN
Sbjct: 582 LHDLVQLDVNTVACIF---SVDRDTYKVIDQN 610


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 472 FPFDISKKADINRLFVSSKTCETL-KLLCRFLFS*SSWHL--ILHNTEKY 612
           F +  SKK ++ +   S +  E   KL C F F    WHL  IL++  KY
Sbjct: 29  FKYKESKKINVYKRKKSDEVVEDCNKLKCTF-FMIEEWHLLAILYDKSKY 77


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 478 FDISKKADINRLFVSSKTCETLKLLCRFLFS*SSWHLILHNTEKYFP 618
           F +  K  +NRL+ S  T + L  L   LF+   W L +      FP
Sbjct: 637 FKVYLKTTLNRLYNSKLTRKVLYYLFSPLFTLELWKLRVRGALSKFP 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,355
Number of Sequences: 5004
Number of extensions: 60438
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)