Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C06
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0850 + 23651496-23651801,23651893-23651986,23652280-236523...    31   0.66 
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    30   1.5  
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560...    29   4.6  
01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324     29   4.6  
02_05_1285 - 35452249-35452604,35452702-35452789,35452908-354535...    28   6.1  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   8.1  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     28   8.1  

>12_02_0850 +
           23651496-23651801,23651893-23651986,23652280-23652398,
           23652456-23652578,23652919-23652978,23653473-23653523
          Length = 250

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = -2

Query: 296 THPENEENTIFIQVPVKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYK----VL 129
           +HP +   T F+Q  + HLL N++ LN++ K+ +  D+       P+   +V      +L
Sbjct: 166 SHPHDFRKTCFLQAVLVHLL-NTSNLNLSRKAYVHDDQQ-STSSKPITMSSVPPLGDLIL 223

Query: 128 EKMDGSRLAV 99
           EK+D   ++V
Sbjct: 224 EKLDEVEISV 233


>02_03_0074 + 14781763-14784191,14784888-14784978,14785180-14785230,
            14785882-14785947,14786509-14786610
          Length = 912

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 608  FSVLCNIRCHEDQLNKNL-HNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL 453
            FS LC+    +      + HN++ + QV DD+NKR  S +      KEG++ +
Sbjct: 851  FSALCDHASSQRTEEMIIGHNAVSIQQVMDDSNKRKPSPY---KGKKEGVFVM 900


>04_04_0990 - 29955207-29955551,29955639-29955813,29955887-29956017,
            29956317-29956436,29956908-29956984,29957070-29957316,
            29957413-29957569,29958191-29958309,29958421-29958555,
            29958636-29958921,29959009-29959211,29959732-29959881,
            29960084-29960266,29960931-29961278
          Length = 891

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -2

Query: 236  ENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSS 57
            E +T  + N  S    + +  K  A + E+N+ K ++K   S+ +  GG+KV +  +  S
Sbjct: 825  EGTTRDDANGSSVENCEIAQAKPDALVAEENLQKSVKKRKSSKSSKKGGKKVKIASTGGS 884

Query: 56   RKVRV 42
            + V +
Sbjct: 885  KDVPI 889


>01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324
          Length = 102

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 251 VKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEK 123
           V+HL+E     N+N + C+ T      +I P++   V+K LEK
Sbjct: 21  VQHLIEKCICYNMNKEECMET-LEKHANIKPVITSTVWKELEK 62


>02_05_1285 -
           35452249-35452604,35452702-35452789,35452908-35453588,
           35453639-35453749,35454012-35454047
          Length = 423

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 521 HQRLVKLSNYCAGFYSVDLRGI 586
           H RLV+L  Y AGF+ VDL+ +
Sbjct: 190 HPRLVELDIYDAGFHLVDLKSL 211


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 446 NIKERSCNIAVMKCYFSSYLVQNG 375
           ++ +R C  A MK YF S+L  NG
Sbjct: 103 DVPQRVCTAAEMKFYFESFLDSNG 126


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 392 YLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTH 291
           +++++G D   NEP  LL  + Y P  +    TH
Sbjct: 85  FIIEDGKDPVANEPLELLPKRTYQPSTIKRKRTH 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,622
Number of Sequences: 37544
Number of extensions: 302529
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)