Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_C06
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 50 2e-06
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 50 2e-06
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 33 0.22
SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19) 30 2.0
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17) 28 8.3
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 28 8.3
SB_29587| Best HMM Match : zf-XS (HMM E-Value=8.9) 28 8.3
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = -2
Query: 395 SYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEEN--TIFIQVPVKHLLENS-- 228
S L QN +Q+ D FY+P+ L+ + +++ + T+ +Q+P+ +L++NS
Sbjct: 605 SKLGQNSEIEQEKSIFKFQDAMFYTPDSLTALMRDEKSDSDAETVLVQIPL-NLIDNSYF 663
Query: 227 TELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKV 48
+ + T+ D+ L Q ++ L M +AVSG RKV +LS S R+V
Sbjct: 664 RKFTLGDVRSNVTESLQMCDVGAWLTQ--FRRLAGMLSGSIAVSGARKVTCVLSASRRRV 721
Query: 47 RVFEME 30
+ +M+
Sbjct: 722 IMLDMD 727
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = -2
Query: 395 SYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEEN--TIFIQVPVKHLLENS-- 228
S L QN +Q+ D FY+P+ L+ + +++ + T+ +Q+P+ +L++NS
Sbjct: 605 SKLGQNSEIEQEKSIFKFQDAMFYTPDSLTALMRDEKSDSDAETVLVQIPL-NLIDNSYF 663
Query: 227 TELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKV 48
+ + T+ D+ L Q ++ L M +AVSG RKV +LS S R+V
Sbjct: 664 RKFTLGDVRSNVTESLQMCDVGAWLTQ--FRRLAGMLSGSIAVSGARKVTCVLSASRRRV 721
Query: 47 RVFEME 30
+ +M+
Sbjct: 722 IMLDMD 727
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/80 (20%), Positives = 42/80 (52%)
Frame = -2
Query: 374 TDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKSCI 195
+D+Q+ ++ D+QFY + E+EE ++ + +HL+E+ +L+ + +S
Sbjct: 2658 SDEQEISESSTGDVQFYPRPLIHKKAATVESEEERVYTEA-TEHLVEDEAKLDSSLESRS 2716
Query: 194 FTDRSVKKDIAPLLEQNVYK 135
F + + ++ L ++ ++
Sbjct: 2717 FEEEVEEMEVDEALSESAFR 2736
>SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 587 RCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKE 468
+CH + N NSL D T RLMS L +SNG E
Sbjct: 415 KCHLLPMTLNNLNSLNFIPKKDYTKDRLMSGMLQLSNGTE 454
>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
Length = 674
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/108 (20%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = -2
Query: 461 YFLAVNIKERSCNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPE- 285
+FL + ++ N+A C + + ++ ++PT +L+ + LS +
Sbjct: 99 FFLPLPLRSALSNMAAGLCELHVFGIF--LPEKLSKPTGYSELKDFVLNNLSSLDIGKAA 156
Query: 284 --NEENTIFIQVPVKHLLENSTEL-NINTKSCIFTDRSVKKDIAPLLE 150
+E N F++ + + T++ N++ SC+F+D + ++PLL+
Sbjct: 157 GLDELNGFFLKSVAPEIFRSLTKIFNLSVSSCVFSDPWKRAKVSPLLK 204
>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
Length = 1084
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 578 EDQLNKNLHNSLR-VSQVFDDTNKRLMSAFLDISNGKE 468
E + LHN LR QV + +R+M DI GK+
Sbjct: 145 EKVTSSRLHNELREAKQVISEKEQRIMELKCDIEGGKQ 182
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 692 YSLVXQQAHLIEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLR 540
YS+ A LI +T +F +H D + F+V+ ++ E + +L LR
Sbjct: 319 YSVSASIAALISIITLIFSGIHLDPARIFTVINLLKSLEFAIVVDLAECLR 369
>SB_29587| Best HMM Match : zf-XS (HMM E-Value=8.9)
Length = 254
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 614 KYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKE 468
K VLCN + N++N + ++V D+T R S +++NG +
Sbjct: 30 KRTKVLCNTQTRHTSGVGNMNNGYKRTKVLDNTQTRHTSGVGNMNNGNK 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,286,854
Number of Sequences: 59808
Number of extensions: 379898
Number of successful extensions: 978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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