Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C06
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC059383-1|AAH59383.1|  808|Homo sapiens anaphase promoting comp...    46   2e-04
AF191338-1|AAF05752.1|  808|Homo sapiens anaphase-promoting comp...    46   2e-04
BC067120-1|AAH67120.1|  754|Homo sapiens protein tyrosine phosph...    31   5.2  
AY171233-1|AAO13168.1|  754|Homo sapiens protein tyrosine phosph...    31   5.2  
AL360020-3|CAI14621.2|  806|Homo sapiens protein tyrosine phosph...    31   5.2  
AL360020-2|CAM20720.1|  754|Homo sapiens protein tyrosine phosph...    31   5.2  
AK094773-1|BAC04421.1|  140|Homo sapiens protein ( Homo sapiens ...    31   5.2  
AK094631-1|BAC04391.1|  394|Homo sapiens protein ( Homo sapiens ...    31   5.2  

>BC059383-1|AAH59383.1|  808|Homo sapiens anaphase promoting complex
           subunit 4 protein.
          Length = 808

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = -2

Query: 341 LDLQFYSPEYLSVITTHPENEE--NTIFIQVPVKHLL--ENSTELNIN-TKSCIFTDRSV 177
           LD QFY  E ++V+       E  + + +Q+P+  +   E+S E     T S    ++  
Sbjct: 639 LDAQFYDDETVTVVLKDTVGREGRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCS 698

Query: 176 KKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKVRVFEMEV 27
                 +  +  +++LE M    +A +G RKV+ +LS + R VRVFEM++
Sbjct: 699 AIPTRTMHFEKHWRLLESMKAQYVAGNGFRKVSCVLSSNLRHVRVFEMDI 748


>AF191338-1|AAF05752.1|  808|Homo sapiens anaphase-promoting complex
           subunit 4 protein.
          Length = 808

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = -2

Query: 341 LDLQFYSPEYLSVITTHPENEE--NTIFIQVPVKHLL--ENSTELNIN-TKSCIFTDRSV 177
           LD QFY  E ++V+       E  + + +Q+P+  +   E+S E     T S    ++  
Sbjct: 639 LDAQFYDDETVTVVLKDTVGREGRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCS 698

Query: 176 KKDIAPLLEQNVYKVLEKMDGSRLAVSGGRKVAVILSKSSRKVRVFEMEV 27
                 +  +  +++LE M    +A +G RKV+ +LS + R VRVFEM++
Sbjct: 699 AIPTRTMHFEKHWRLLESMKAQYVAGNGFRKVSCVLSSNLRHVRVFEMDI 748


>BC067120-1|AAH67120.1|  754|Homo sapiens protein tyrosine
           phosphatase domain containing 1 protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717


>AY171233-1|AAO13168.1|  754|Homo sapiens protein tyrosine
           phosphatase protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717


>AL360020-3|CAI14621.2|  806|Homo sapiens protein tyrosine
           phosphatase domain containing 1 protein.
          Length = 806

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 729 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 769


>AL360020-2|CAM20720.1|  754|Homo sapiens protein tyrosine
           phosphatase domain containing 1 protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717


>AK094773-1|BAC04421.1|  140|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37454 fis, clone BRAWH2011066. ).
          Length = 140

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 63  LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 103


>AK094631-1|BAC04391.1|  394|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37312 fis, clone BRAMY2016892. ).
          Length = 394

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 486 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 611
           ++KG+HQ+ +CV+  + N QTI  V ++  F+A  I  + K+
Sbjct: 317 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 357


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,308,282
Number of Sequences: 237096
Number of extensions: 1733836
Number of successful extensions: 4176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4161
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)