Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C06
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.90 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 524 DDTNKRLMSAFLDISNGKEGIYFLAVNIKERSCNIAVMKCYFSSYLVQNGTDD 366
           +D ++  +   + ISN K   +FLA  ++E +C  + +         QNG  D
Sbjct: 436 EDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQNGRKD 488


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 398 SSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENT 270
           S YL+Q G   Q + P++ L      P + S  +  PE+ +N+
Sbjct: 195 SQYLLQQGLGLQGHNPSSGLQPGEGLPMWKSDTSDGPESHQNS 237


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 11  HHHHHQ 28
           HHHHHQ
Sbjct: 352 HHHHHQ 357


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = -2

Query: 566 NKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIKE 435
           NK +HN+      +++ N    +   + +N  + +Y+  +NI++
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 410 KCYFSSYLVQNGTDDQQNE 354
           +CYFSS L ++ T   + E
Sbjct: 307 ECYFSSDLSESETSSDEEE 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,519
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)