Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C06
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4...    33   0.14 
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    33   0.18 
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    31   0.73 
At5g16920.1 68418.m01983 expressed protein                             31   0.96 
At5g55420.1 68418.m06904 hypothetical protein                          29   3.9  
At2g28130.1 68415.m03417 expressed protein                             28   6.8  

>At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P42498
            Phytochrome E {Arabidopsis thaliana}
          Length = 1112

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
 Frame = -2

Query: 617  GKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIK 438
            G+ F V C ++C +D L K L  SL      D+  +  +  F +    KEG Y  A    
Sbjct: 781  GEVFGVFCKVKC-QDSLTKFL-ISLYQGIAGDNVPESSLVEFFN----KEGKYIEASLTA 834

Query: 437  ERSCNI--AVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIF 264
             +S NI   V++C+F   ++   +     E    L     S   L+ +    +N  N I 
Sbjct: 835  NKSTNIEGKVIRCFFFLQIINKESGLSCPE----LKESAQSLNELTYVRQEIKNPLNGI- 889

Query: 263  IQVPVKHLLENSTELNINTKSCIFTDRSVKKDIAPLLEQNVYKVLEK 123
                  H L  S+E++ + +  + T  + +K I  ++E    K +E+
Sbjct: 890  ---RFAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEE 933


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 329 FYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTKSC-IFTDRSVKKDIAPLL 153
           F SP  ++ +   PE    T F +V V HL   ST    ++  C I +  S + +   + 
Sbjct: 22  FLSPLRVASLLVFPEKSSATFFRRVQVPHLFSTSTTTLFSSVKCSIHSTSSPETENQAVF 81

Query: 152 EQNVYKVLEK 123
             NV  +LE+
Sbjct: 82  RPNVVDILEE 91


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 21/70 (30%), Positives = 38/70 (54%)
 Frame = -2

Query: 383 QNGTDDQQNEPTNLLDLQFYSPEYLSVITTHPENEENTIFIQVPVKHLLENSTELNINTK 204
           + GT+  Q    ++ +L    P   S+  +  E  EN IF++   KHL +  ++LNIN+K
Sbjct: 521 KTGTERIQGMTLHMCEL----PRAASIDGSAFEQMENLIFLKF-FKHLNDRESKLNINSK 575

Query: 203 SCIFTDRSVK 174
           + +   RS++
Sbjct: 576 NRMVLPRSLR 585


>At5g16920.1 68418.m01983 expressed protein
          Length = 256

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 491 LDISNGKEGIYFLA-VNIKERS-CNIAVMKCYFSSYLVQNGTDDQQNEPTNLLDLQFYS 321
           L+ISNG    YFL  V I  R+ C++  +KC+    ++Q+ +    + P N   L F S
Sbjct: 127 LEISNGGRSNYFLNNVKIISRNICSLGSIKCHGIDGILQSPSTVDDDSPRNNHTLPFIS 185


>At5g55420.1 68418.m06904 hypothetical protein 
          Length = 112

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 273 YNIYSGTSKTSPGKFY*TQY*HKILYFY*QKCKEGYCAFI 154
           YN ++ TS  SPGK++  +   +IL F+  K ++ Y  F+
Sbjct: 48  YNAFARTSLISPGKYHSNR---RILLFFSAKKEKSYVCFV 84


>At2g28130.1 68415.m03417 expressed protein
          Length = 458

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 509 RLMSAFLDISNGKEGIY--FLAVNIKERSCNIAVMKCYFSSYLVQN 378
           +++   LD  +  E +    +++N+KERSCN+   K Y    L +N
Sbjct: 360 QMLVVLLDHKDSDENLLSSLMSINVKERSCNL--FKMYIFLVLAEN 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,707
Number of Sequences: 28952
Number of extensions: 280937
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)