Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C04
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.2  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 152 HGWLSVLLYATLKSSKYQAQYELS*FSTDGPPIQY 256
           + WLSV   +  + ++ + QY L  F+T  P + Y
Sbjct: 162 NNWLSVFWGSAWQWNEERKQYYLHQFATGQPDLNY 196


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 283 KTLFSACXXXXXXXXXXXXVGTGRKSEITTTQHACNITFKN*VN 414
           + L  AC            V TG  SEIT  Q A  + +K+  N
Sbjct: 197 ENLVQACFQQAQTTYVTKEVATGTASEITQIQEA-TLVYKDGTN 239


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 173 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 208


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 173 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 208


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 173 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 208


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 178 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 213


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 173 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 208


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 335 IIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 228
           I E + IKNV      +  +   L +NIE  G  SK
Sbjct: 173 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSGNESK 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,263
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)