Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C03
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    28   0.34 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   3.2  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    24   7.3  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    24   7.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   7.3  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    23   9.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   9.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   9.6  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 245 HLIGVQRFCLQLKKTDSNPCWNE 177
           H  G   +C ++ K D NP WNE
Sbjct: 499 HKFGKPLYCTRVVKQDLNPIWNE 521


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 231  TKILFAIKKNRQQSLLERTAEDFYY 157
            TK+   +  N   SLL+R AED  Y
Sbjct: 951  TKMTLPVSFNEPTSLLQRVAEDMEY 975


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 CLFFLIANKIFVRRSNDFNAVFL 265
           CLF  ++N  F +R  D  AVF+
Sbjct: 539 CLFLSLSNYRFFKRKLDIYAVFV 561


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 167 SSAVRSNKDCCLFFLIANKIFVRRSNDFNAVFLWLTKFYNCRTFQY 304
           S A   NK+     + A       ++DF++     T  YN RTFQY
Sbjct: 145 SMATNLNKNINSTSVPAYNFHNSMTSDFDSASQPHTDAYNARTFQY 190


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 246 SFDRRTKIL---FAIKKNRQQSLLERTAEDFYYL 154
           +FD   +++   FA   + QQ+L   ++ DFY+L
Sbjct: 583 TFDNEVRLIDASFASPTHPQQALKSSSSNDFYFL 616


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 164 KSSAVRSNKDCCLFFLIANKIFVRRSNDFNAVFLWLTKFYNC 289
           ++ ++ SN DC L   + N   + R N  + V +++   Y C
Sbjct: 80  ETQSIFSNPDCSLMKKLKNIARLDRLNPSDYVIVYIPGGYGC 121


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 231 YADQMISMLFFCGS 272
           +ADQM+S+ + CG+
Sbjct: 429 FADQMVSLTYACGN 442


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 319  MNNREVLKCSAI-IKFGEPQKNSIEI-I*SAYKDFVCN*KKQTAILVGTNSR 170
            +++RE +   AI I+  +    S+   + +AY+DF+   K+Q A ++  NSR
Sbjct: 3012 LSHRESIHARAILIQIAKTYPQSLHFQLRTAYEDFLMLKKQQAANVLRGNSR 3063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,505
Number of Sequences: 5004
Number of extensions: 21808
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)