Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C03
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           34   0.034
SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  

>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 239 IGVQRFCLQLKKTDSNPCWNEQQKIFI 159
           IG Q+F  ++KK D NP WNE  + F+
Sbjct: 396 IGAQKFRTKVKKNDLNPTWNETFEAFV 422


>SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 234 ADQMISMLFFCGSPNFIIAEHFSTSLL 314
           + ++++  F CG PNF +A  F  +LL
Sbjct: 30  SSEIMASRFVCGGPNFTVAVLFFINLL 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,996,040
Number of Sequences: 59808
Number of extensions: 146864
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)