Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C03
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03910.1 68414.m00376 expressed protein low similarity to cac...    26   5.6  
At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5) i...    25   9.7  
At1g04150.1 68414.m00405 C2 domain-containing protein contains I...    25   9.7  

>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
           [Drosophila melanogaster] GI:7673675; expression
           supported by MPSS
          Length = 672

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 163 KIFCCSFQQGLLSVFFNCKQN 225
           K F C+F++G+L ++FN K++
Sbjct: 648 KGFKCTFERGILHLYFNFKRH 668


>At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5)
           identical to multi-copper oxidase-related protein
           (SKU5)(GI:18158154) [Arabidopsis thaliana]; similar to
           pollen-specific protein precursor - common tobacco,
           PIR2:S22495; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 587

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 334 EFGRPMNNREVLKCSAIIKFGEPQKNS 254
           EFG P N   VL C A+ K  +PQK S
Sbjct: 537 EFGHPDN---VLYCGALSKLQKPQKVS 560


>At1g04150.1 68414.m00405 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1012

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 230 QRFCLQLKKTDSNPCWNEQQKIFIIYV 150
           QR   ++K  D NP WNE+    +I V
Sbjct: 43  QRLRTKVKPKDLNPIWNEKLVFHVIDV 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,281,494
Number of Sequences: 28952
Number of extensions: 105193
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)