Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_C02
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   318   3e-87
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   315   2e-86
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   315   2e-86
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    29   3.2  
At4g39450.1 68417.m05582 expressed protein                             29   4.3  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    28   7.4  
At1g59590.1 68414.m06702 expressed protein                             28   7.4  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    27   9.8  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   9.8  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   9.8  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   9.8  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  318 bits (780), Expect = 3e-87
 Identities = 153/190 (80%), Positives = 173/190 (91%), Gaps = 1/190 (0%)
 Frame = -3

Query: 578 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 402
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 401 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 222
           SLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 221 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKD 42
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 41  ELERVAKSNR 12
           E+ERVAK+NR
Sbjct: 198 EIERVAKANR 207


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  315 bits (774), Expect = 2e-86
 Identities = 153/196 (78%), Positives = 175/196 (89%), Gaps = 1/196 (0%)
 Frame = -3

Query: 596 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 420
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 419 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 60
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 59  AIKKKDELERVAKSNR 12
           AIKKKDE+ERVAK+NR
Sbjct: 192 AIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  315 bits (774), Expect = 2e-86
 Identities = 153/196 (78%), Positives = 175/196 (89%), Gaps = 1/196 (0%)
 Frame = -3

Query: 596 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 420
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 419 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 240
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 239 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 60
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 59  AIKKKDELERVAKSNR 12
           AIKKKDE+ERVAK+NR
Sbjct: 192 AIKKKDEIERVAKANR 207


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -1

Query: 637  PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 464
            P +  W+ WK   L + PP  L       GV  + +S +   +T  P KR  +N+ ++ L
Sbjct: 795  PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850

Query: 463  AGMHTSVSVKPSAQSWSALQTL 398
             G H  +   P   + +AL+ L
Sbjct: 851  RGCH-GLEAIPDLSNHNALEKL 871


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -3

Query: 206 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 63
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 226 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN*LMQP 80
           +F ++P+ F    + TK    CA V +    +ILK S  +L  +  + P
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELLSQDLSIDP 781


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 80  KGSSNSYAIKKKDELERVAKSNR 12
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 562 ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVSV 437
           A+G  T+C +   LCRT   + R   ++    LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 601 YHKPPTFLKSSFSADGVATMCKSLI 527
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = -3

Query: 530 DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 351
           D+S   Y  V +  AK           K+ +++ C I  +  N+LMM   N G    A  
Sbjct: 240 DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFE 299

Query: 350 IVKHAFEIIHLLTGENPLQVLVTAIINSG 264
           I +   +   LL G +  ++++ ++  SG
Sbjct: 300 IYESMEKTDSLLDG-STYELIIPSLAKSG 327


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 625 AWLWKPCLYHKPPTFLKSSFSA 560
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,773
Number of Sequences: 28952
Number of extensions: 335565
Number of successful extensions: 834
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)