Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B24
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 138 9e-34
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.26
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 28 1.8
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 2.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.4
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 4.2
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 7.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.7
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 9.7
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 9.7
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 138 bits (334), Expect = 9e-34
Identities = 65/104 (62%), Positives = 81/104 (77%)
Frame = -2
Query: 324 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 145
R+A YN KKA KP + KS + LDVKPWDDET M LE+AVRSI DGL+WG +KLVP+
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170
Query: 144 YGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAAFNKV 13
+G++K QI+ VVEDDKVS++ L EE+E EDYVQS DIAA +K+
Sbjct: 171 FGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 594 TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLES 475
T+ +K+ S E ENK LK +ID+ +N + S V+ + S
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSS 427
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -2
Query: 612 LAGVPNTELSTKVISLENENKDLKKAID----DLRNLVISLQVRVETLESSSSITSDCIQ 445
LA L+T+++ L+N+ KDL D DLR L SL+ V +L+ I S+ ++
Sbjct: 1612 LAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTL-RSLEDSVASLQKECKIKSNTVE 1670
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 512 SSACKSVLKPWNHPAVSPLIVFKCSQKNLQQLLL 411
+ A S+ K N PA +PLIV S L++LLL
Sbjct: 73 TEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLL 106
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 597 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 493
NT+LS K+ ENE +DL + L++ ++ L+ R
Sbjct: 36 NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEAR 70
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 630 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSS 466
M ++ ++G T + + +E+ENK L + D+RN V L+ + E S
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFEDDYS 300
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 247 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 351
LY+Q + W+F + C+ +LF +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 666 KARQHIKNSLECMDSVATLAGVPNTELSTKVIS 568
K Q + ++ C+D++ +L V N E+ VIS
Sbjct: 63 KFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVIS 95
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 4 SVLDFVERSNIDTLYIVFIFLDFLCKPINRNLIIFNNTGNLQLMDTISQR 153
SVLD + N T I+F + KP+N +LI+ N TG L + + R
Sbjct: 970 SVLDDIVDFNHLTWSILFGENYIILKPLNTDLIV-NKTGKLVALRPLVNR 1018
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 585 STKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSS 469
S ++ L+ EN+ L DLR I+L+ ++ET+++ +
Sbjct: 32 SIRIKELQLENERLLSENIDLRTTAINLEEQLETVQNEN 70
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 600 PNTELSTKVISLENENKDLKKAID 529
PNTEL+ + L KDLK A++
Sbjct: 37 PNTELTYAIDELSETLKDLKAAVE 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,318
Number of Sequences: 5004
Number of extensions: 52307
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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