Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B24
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    28   0.12 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 207 AVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDK 97
           AV  I+   LL G    VP++ G+H+     V++D K
Sbjct: 142 AVAGIAVVWLLAGLISFVPISLGLHRANEPVVLDDSK 178



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 455 SEVILLDDSKVSTRTCRL 508
           +E ++LDDSK    TC L
Sbjct: 169 NEPVVLDDSKEEHPTCAL 186


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 49 CTKCRYCCVQQSL 11
          C KC Y CV +S+
Sbjct: 19 CEKCSYSCVNKSM 31


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 516 LVISLQVRVETLESSSSITSDCIQVQS 436
           LV+   + +  L+   + T+DC QV S
Sbjct: 201 LVVDENIELPQLQLVKNYTADCTQVYS 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,394
Number of Sequences: 438
Number of extensions: 3399
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)