Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B23
         (438 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.7  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   2.9  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   9.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   9.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 127 STVTQCCRPLNFRSMLVQQRLCFLP 201
           ST    CR   FR+   +  +CF P
Sbjct: 383 STTANSCRSSTFRNNRDEYNVCFRP 407


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 23  LIPNQTXKVRS-W*RCRERVMFSITSW 100
           LI N   +V S W RC+++++  + +W
Sbjct: 66  LIFNTCGEVFSAWVRCQDQILIFLVNW 92


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 179 SSGCASCRYSR*AETEH 229
           S GC +C Y    E+ H
Sbjct: 33  SQGCKACGYHSPLESNH 49


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 MGATNGVNRPPVPYI 272
           MG T G   PP PY+
Sbjct: 8   MGHTGGGLMPPQPYM 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,050
Number of Sequences: 336
Number of extensions: 1956
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)