Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B22
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   2.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.5  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.8  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 394 ISIGTIPNIQHCIKNH 347
           I I T PN+QHCIK +
Sbjct: 209 IGITTFPNLQHCIKKN 224


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 FPHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQVLR 227
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 123  HGCLSYISWYCVICCNLSTLCFSLKSGEI 209
            H CL  + W   I  +L + CFSLK+ EI
Sbjct: 989  HKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 653 WNVFIDAEVTVFMVKGVHIGTEVAGSSRVFTK 558
           W V IDA+VT   +K V  G  V+ +SR F K
Sbjct: 555 WGVGIDADVTSAGLKAVMSG--VSRASRAFAK 584


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 371 HTALHQESPILQSSSPN*MQVTSTYCDAT 285
           +T+LHQ   I  SSS N MQ +S    +T
Sbjct: 277 NTSLHQSFGIASSSSNNYMQTSSELTSST 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,978
Number of Sequences: 5004
Number of extensions: 60863
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)