Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B22
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   4.6  
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371...    28   6.0  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    28   6.0  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    28   8.0  
03_02_0005 + 4873802-4874036,4874156-4874227,4874728-4874815,487...    28   8.0  
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    28   8.0  

>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 666 GLMLLECFY*CRGDCIYGKGCAYWY 592
           G  L+ C+Y  +G+C+ G  CA+++
Sbjct: 112 GKQLVPCYYFKKGNCLKGDRCAFYH 136


>12_01_1022 -
           10435409-10435564,10435950-10436219,10436820-10437125,
           10437932-10438057,10439825-10439893,10440443-10440487,
           10440717-10440776,10441527-10441589,10442186-10442266,
           10442494-10442916
          Length = 532

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 651 EC-FY*CRGDCIYGKGCAYWYRGGRQ 577
           EC +Y   G C +GK C Y +R G++
Sbjct: 245 ECKYYSTPGGCKFGKACKYLHRDGKE 270


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 529 YAAFSLHSVSLVNTLELPATSVPICTPFTINTVTSASIK 645
           +A   LH  S V  L+  AT  P+   F INT    +IK
Sbjct: 189 FAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIK 227


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -3

Query: 508 QNLGITYFIIFKELQQIENNNPRHQNIVRRIYCQLGKCISIGTIPNIQHCIKNHLFCSHP 329
           +NL      I + LQQ    NP        +YC +G   S+G  P +    +    C HP
Sbjct: 48  RNLDYDLHFILQNLQQELQKNPDSLPFDEILYCNIGNPQSLGQQP-VTFFREVLSLCDHP 106

Query: 328 PL 323
            L
Sbjct: 107 AL 108


>03_02_0005 +
           4873802-4874036,4874156-4874227,4874728-4874815,
           4875192-4875339,4875429-4875467,4875642-4875722,
           4875781-4875846
          Length = 242

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 550 SVSLVNTLELPATSVPICTPFTI 618
           ++++  TLE PAT++P+ +P TI
Sbjct: 217 TIAVAVTLEAPATALPLVSPLTI 239


>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 517 F*TEYAAFSLHSVSLVNTLEL-PATSVPICTPFTINTVTSASIKTFQQHQS 666
           F +E    SLH + L N+  +   TS+P+CT   +  VT    K  QQ Q+
Sbjct: 71  FLSESLLTSLHLLHLFNSATVVDFTSLPLCTFICLVAVTMRPSKANQQDQN 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,160
Number of Sequences: 37544
Number of extensions: 353387
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)