Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B22
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.5  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   28   6.2  

>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 660

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 415 YCQLG-KCISIGTIPNIQHCIKNHLFCSHPPLTK 317
           Y Q G K I  G + N  H + NH    HPP T+
Sbjct: 192 YTQFGQKKIFTGNLMNAWHVVVNHTLDKHPPPTR 225


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 290  HHNK*KSLAFS*GRMTAK*VILDAMLYVWDCSNTDTFSELAINSPYNILMTWIIIFNLL 466
            H ++  SLAFS        V LD  L VWD  + +    L  +  Y +   W  + N +
Sbjct: 1263 HEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHDGYPVCCAWNPVDNTM 1321


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 490 RLCLNFVHLF*TEYAAFSLHSVSLVNTLELPATSVPICTPFTINTVTSASI 642
           RL +N   L    Y AF+ + VS +   +LPAT+VP+     + TVTSA +
Sbjct: 71  RLVMNKDSLAEEWYYAFN-NEVSALRQCDLPATTVPV----AMTTVTSAPV 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,313,175
Number of Sequences: 59808
Number of extensions: 443617
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)