Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B22
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    28   5.4  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    28   7.2  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 240 WVVSTST-PDLLFHHFSMKSRVYSNYNKLHSTRIY 139
           W++ + T PDLL H+F+++ R+   Y +    R++
Sbjct: 502 WILWSRTHPDLLVHNFTLRERLEKVYRRACQLRLW 536


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 105 VDYLFPHGCLSYISWYCVICCNLSTLCFSLKS 200
           ++Y+  +G +    +YC++  + S +CF+L S
Sbjct: 293 LNYVIGYGSVFISFFYCIVATSHSVICFALSS 324


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 93  FLQTVDYLFPHGCLSYISWYCV 158
           F+ T+ ++FP  CL+Y  W+ +
Sbjct: 191 FITTIPWIFPTHCLTYWIWFFI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,314
Number of Sequences: 27780
Number of extensions: 342718
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)