Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B22
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18640.1 68416.m02368 zinc finger protein-related contains si...    30   1.3  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    27   8.8  

>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 451 NNPRHQNIVRRIYCQLGKCISIGTIPNIQHCIKNHLFCSHPPLTK 317
           N   ++NIV+++  ++   +  G +P  Q  I ++L  S P LTK
Sbjct: 620 NKDGYKNIVKKVAEKVTGTMQSGNVPQTQEKIDHYLSASKPKLTK 664


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 SWYCVICCNLSTLCFSLKSGEIAGQVLR 227
           +W+   C NL + C   K  E+ G+ LR
Sbjct: 612 NWFAATCWNLGSRCGKEKKYELCGEFLR 639


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,640
Number of Sequences: 28952
Number of extensions: 301355
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)