Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B20
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.0  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 275 ENESELRAGFHAIPSMQRMHMHVISTDMISTSL 177
           EN  ++    H I SM   H H +  DM+  ++
Sbjct: 344 ENMMDMSLTRHQISSMGHSHAHPMHHDMLPETM 376


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 275 ENESELRAGFHAIPSMQRMHMHVISTDMISTSL 177
           EN  ++    H I SM   H H +  DM+  ++
Sbjct: 344 ENMMDMSLTRHQISSMGHSHAHPMHHDMLPETM 376


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -1

Query: 517 LPVYLQKHQN 488
           LPV+LQ+H+N
Sbjct: 473 LPVFLQEHRN 482


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -1

Query: 517 LPVYLQKHQN 488
           LPV+LQ+H+N
Sbjct: 473 LPVFLQEHRN 482


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,952
Number of Sequences: 336
Number of extensions: 2574
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)