Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B20
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17)                   29   2.6  
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   29   3.5  
SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)                   29   4.6  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         28   6.0  
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)              28   6.0  
SB_36622| Best HMM Match : Entericidin (HMM E-Value=1.2)               28   6.0  
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)                    28   8.0  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   28   8.0  

>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -3

Query: 359  EINSIYKLNKSHISLLEEFGNIFKELKEENE 267
            E +S+Y LN+S  S LEEF N+    K+EN+
Sbjct: 1367 ERSSVYALNESSRSELEEFKNMNNNFKDEND 1397


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTPKHWSLGLIA 465
           I KSTPI  + +N T   P  TP++   G+I+
Sbjct: 257 IPKSTPIDPRTRNDTEESPKSTPRNCGPGIIS 288


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
 Frame = -3

Query: 485  WSLGLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEE 306
            W+   I  M+   ++ +   KV++       A++ Y     E +     L  S+   +++
Sbjct: 875  WAPQAITDMRSVEALQRRATKVILTNS----AELTY----QERLEQANLLPLSYWHEIKD 926

Query: 305  FGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPY 126
               ++K L       L   F  +PS+ R   H  S D+ +   KTK+  NSF  +  IP 
Sbjct: 927  LVFMYKCLNGHYNIPLSHYFKPLPSL-RSSRHRSSLDIATPLYKTKLFQNSFFDR--IPK 983

Query: 125  DELLQELKD--IGNIRKIPSELHTSLMKT 45
             + + E  D  IG+     +E H    +T
Sbjct: 984  SDTIDETDDNNIGSEELDQNEKHEDEAET 1012


>SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTPKHWSLGL 471
           I KSTP +S+ +N T   P  TP++  + L
Sbjct: 14  IPKSTPTVSRTRNDTEESPKSTPRNCGVSL 43


>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 476 GLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLL 312
           G I   + P  I+   ++ +  +D  P+A  H LV+P + I  +   + S   LL
Sbjct: 9   GKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLL 63


>SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTPKHWSLGLIASMKD--PNSIIKNTEKVVVIKDKYPKAK 387
           I KSTP   + +N T   P  TP++        + D  P S  +N  K+   K   PK K
Sbjct: 14  IPKSTPTDPRTRNDTEESPKSTPRNCGENFRKDLPDITPESFEENEFKLNRRKGLKPKTK 73


>SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)
          Length = 189

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTPKHWSLGLIASMKDPNSI 441
           I KSTP   + +N   + P  TP++++  L+    DP  +
Sbjct: 56  IPKSTPTDPRTRNDCEASPKSTPRNYNHRLVDDSGDPTRV 95


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 188 STSLKTKIHWNSFCTKFFIPYDELLQELKD 99
           +T+ KT I + +FC KF     ELL+ LKD
Sbjct: 45  NTAEKTVIKYGTFCNKFLRCGLELLKSLKD 74


>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
          Length = 584

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -3

Query: 452 PNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKL----NKSHISLLEEF 303
           PN+II + +++V  K +  KAKV  L   H  + S++      NK+  S ++EF
Sbjct: 191 PNAIIDHEKEIVKTKMEVVKAKVSDLSHAHANVFSLFSRLGAENKALTSEIDEF 244


>SB_36622| Best HMM Match : Entericidin (HMM E-Value=1.2)
          Length = 166

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 464 SMKDPNSIIKNTEKVVVIKDKYPK 393
           S KD N+ ++  EKVVVIKD   K
Sbjct: 85  SCKDANNNVQTIEKVVVIKDSVAK 108


>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 428 EKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEF-GNIFKE--LKEEN 270
           E  +V+  ++   K + L  PH ++NS+ +   SH  LL  F G + KE  +KE+N
Sbjct: 130 EPHIVLGHRHASHKRYALTRPHTDLNSLVRPLPSH--LLRHFGGKMSKEWSVKEDN 183


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTPKHWSLGLIASMKD 453
           I KSTP   + +N T   P  TP++++L     + D
Sbjct: 793 IPKSTPTDPRTRNDTEESPKSTPRNYALNAQIKVAD 828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,766
Number of Sequences: 59808
Number of extensions: 305398
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)