Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B20
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    28   5.3  
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro...    28   5.3  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    28   5.3  
U49954-5|AAA93427.2|  445|Caenorhabditis elegans Odorant respons...    28   7.0  
U49954-4|AAN84809.1|  473|Caenorhabditis elegans Odorant respons...    28   7.0  
U49954-3|AAN84808.1|  475|Caenorhabditis elegans Odorant respons...    28   7.0  
AF055911-1|AAC39022.1|  445|Caenorhabditis elegans odorant respo...    28   7.0  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    27   9.3  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
 Frame = -3

Query: 440 IKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEEN--- 270
           +K  +  VVI D  PKAK HYLVL  + I     L  + + LLEE     +EL  E+   
Sbjct: 25  LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKK 84

Query: 269 -------ESELRAGFHAIP--SMQRMHMHVISTDMISTSLKTKIHWNSFCTKFFIPYDEL 117
                  E  LR GFH  P  S+  +HMH+I        +  K+ +     K F P  EL
Sbjct: 85  KGEADTVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLISRKLTFRP--GKVFKPAREL 142

Query: 116 LQELKD 99
           + +LK+
Sbjct: 143 IDQLKE 148


>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 476 GLIASMKDPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEF-- 303
           G I   + P  II   ++ +   D  P+A +H+LV+P   I+ +     S  +L+ +   
Sbjct: 24  GKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMV 83

Query: 302 --GNIFKELKEEN--ESELRAGFHAIPSMQRMHMHVI 204
               + K+L   N     +  G     S+  +H+HV+
Sbjct: 84  TASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVL 120


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = -3

Query: 344  YKLNKSHISLLEEFGNIFKELKEENESELRAGFHAIPSMQRMHMHVISTDMISTSLKTKI 165
            + L   H  L+E      K L ++  +EL    H I    R H H    DM++  +  K 
Sbjct: 1195 FTLKIGHAQLIEAQIRHLK-LSDDVRAELLDALHLISVSDRPHSHKEKMDMLTPKIGAKA 1253

Query: 164  HWNSFCTKFFIPYDELLQELKD 99
               +  TK  IP ++     K+
Sbjct: 1254 --ANIITKLLIPVEDNFGAFKE 1273


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical protein
            F52E10.1 protein.
          Length = 1201

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 455  DPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNK 330
            DP+S+ K+    +V + K P+  +H++    E I   Y+LN+
Sbjct: 1122 DPDSLAKSARVRMVKQVKSPEHMIHHIEEIDESIGHNYRLNR 1163


>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger protein
            protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 455  DPNSIIKNTEKVVVIKDKYPKAKVHYLVLPHEEINSIYKLNK 330
            DP+S+ K+    +V + K P+  +H++    E I   Y+LN+
Sbjct: 1124 DPDSLAKSARVRMVKQVKSPEHMIHHIEEIDESIGHNYRLNR 1165


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = -3

Query: 422 VVVIKDKYPKAKVHYLVLPHEEINSIYKLNKSHISLLEEFGNIFKELKEENESELRAG 249
           +++I +KY K   ++L++ +  +NS+   + ++    E+  N F+  K+ +  E R G
Sbjct: 225 IIIIANKYKKCYKNFLLIIYSLLNSLTHFSSTNCENFEK-KNSFRRHKDMDGYECRRG 281


>U49954-5|AAA93427.2|  445|Caenorhabditis elegans Odorant response
           abnormal protein4, isoform a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 KNFVQKLFQCIFVLRDVDI 192
           KNFV  LFQC F L D +I
Sbjct: 210 KNFVNNLFQCEFTLLDGEI 228


>U49954-4|AAN84809.1|  473|Caenorhabditis elegans Odorant response
           abnormal protein4, isoform c protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 KNFVQKLFQCIFVLRDVDI 192
           KNFV  LFQC F L D +I
Sbjct: 240 KNFVNNLFQCEFTLLDGEI 258


>U49954-3|AAN84808.1|  475|Caenorhabditis elegans Odorant response
           abnormal protein4, isoform b protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 KNFVQKLFQCIFVLRDVDI 192
           KNFV  LFQC F L D +I
Sbjct: 242 KNFVNNLFQCEFTLLDGEI 260


>AF055911-1|AAC39022.1|  445|Caenorhabditis elegans odorant response
           protein ODR-4 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 KNFVQKLFQCIFVLRDVDI 192
           KNFV  LFQC F L D +I
Sbjct: 210 KNFVNNLFQCEFTLLDGEI 228


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -3

Query: 362 EEINSIYKLNKSHISL----LEEFGNIFKE---LKEENESELRAGFHAIPSMQRMHM 213
           E++NS+YK  K H+ L     EEF +   E   L++E E   R   H      R  M
Sbjct: 222 EKVNSVYKPTKPHVELKTVKREEFWSKMNEEEKLRQEEEKTAREQAHKQFEADRQRM 278


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 197 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 24
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 23  SF 18
           SF
Sbjct: 374 SF 375


>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
           protein F11C1.5b protein.
          Length = 1339

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 197 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 24
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 23  SF 18
           SF
Sbjct: 374 SF 375


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
           protein F11C1.5a protein.
          Length = 1804

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 197 DMISTSLKTKIHWNSFCTKFFIPYDELLQELKDIGNIR--KIPSELHTSLMKTPLQCNQC 24
           +++S S K  I  N+F TKF +   E  +ELK  G +   ++P++     MK P   +  
Sbjct: 316 EVLSDSEKDLI--NTFKTKFELSTHERTRELKTDGALHTVQVPADKRKIQMKLPTPSHPT 373

Query: 23  SF 18
           SF
Sbjct: 374 SF 375


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 560 IGKSTPIMSKRKNTTSSIPSKTP--KHWSLGLIASMKDPNSIIKNTEKVV 417
           +G STP  +K+K       + TP  + W   +    K+PN   +N ++ V
Sbjct: 375 LGNSTPTKNKKKRRKHDYAATTPIVRKWDKDVPKKPKNPNFDYRNLKEYV 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,110
Number of Sequences: 27780
Number of extensions: 247472
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)