Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B19
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 108 5e-24
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 105 3e-23
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 95 6e-20
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 81 8e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 77 2e-14
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 5e-10
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 62 5e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 1e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 1e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 1e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 1e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 5e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 5e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.013
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.054
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.054
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.071
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 34 0.094
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.094
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.094
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.16
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.22
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.22
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.29
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 33 0.29
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.38
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.50
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.50
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.66
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.66
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.66
At3g31950.1 68416.m04046 hypothetical protein 31 0.88
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.88
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 1.2
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.2
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.5
At5g47430.1 68418.m05844 expressed protein 30 1.5
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.5
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.5
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.5
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.5
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.5
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.5
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 2.0
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 2.0
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 2.0
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.7
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.7
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.7
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.7
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.7
At5g61670.2 68418.m07738 expressed protein 29 3.5
At5g61670.1 68418.m07737 expressed protein 29 3.5
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 3.5
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.5
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 4.7
At5g21140.1 68418.m02524 expressed protein 29 4.7
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.7
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.7
At4g06479.1 68417.m00885 hypothetical protein 29 4.7
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.7
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 4.7
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 6.2
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 6.2
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 6.2
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 6.2
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 6.2
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 8.2
At4g06526.1 68417.m00938 hypothetical protein 28 8.2
At2g31850.1 68415.m03889 expressed protein 28 8.2
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 8.2
At2g20470.1 68415.m02390 protein kinase, putative contains prote... 28 8.2
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla... 28 8.2
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 8.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 108 bits (259), Expect = 5e-24
Identities = 56/163 (34%), Positives = 74/163 (45%), Gaps = 31/163 (19%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA----------- 616
Y C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 135 YNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVK 194
Query: 615 ---DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESAT 475
D CY C GH AR+C Q +CY+C GHIAR+C + +
Sbjct: 195 GGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQPS 252
Query: 474 QTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 367
+ CY C SGH++R+C CY CGK GH +REC
Sbjct: 253 RGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 105 bits (251), Expect = 4e-23
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 34/168 (20%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------KEE 619
Y C GH +++C GG +R E C+ C TGHFARDC K
Sbjct: 103 YNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGG 162
Query: 618 ADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE----GGR 487
D CY C GH+AR+C Q CY C GH AR+C + G
Sbjct: 163 NDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNV 222
Query: 486 ES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 361
S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = -1
Query: 774 SSVXYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA------- 616
S Y C GH AR+C SR C++C +GH ARDC +
Sbjct: 229 SGTCYSCGGVGHIARDCATKRQPSRG---------CYQCGGSGHLARDCDQRGSGGGGND 279
Query: 615 DRCYRCNGTGHIARECA 565
+ CY+C GH AREC+
Sbjct: 280 NACYKCGKEGHFARECS 296
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 616
Y+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 256 YQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 777 SSSVXYKCNRTGHFARECT 721
+ + YKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 420 GTKTCYVCGKPGHISREC 367
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 105 bits (252), Expect = 3e-23
Identities = 58/167 (34%), Positives = 76/167 (45%), Gaps = 35/167 (20%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK-------------- 625
Y C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 133 YMCGDVGHFARDCRQSGGGNSGGGGGGGRP-CYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 624 -EEADRCYRCNGTGHIARECAQSPDE------PSCYNCNKTGHIARNC----PEGGRESA 478
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGG 251
Query: 477 TQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 367
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 252 -RACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 90.6 bits (215), Expect = 1e-18
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 39/172 (22%)
Frame = -1
Query: 762 YKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEADR----- 610
+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 97 FNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGG 156
Query: 609 ------CYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGR 487
CY C GH+A++C + CY C GH AR+C + G
Sbjct: 157 GGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGG 216
Query: 486 ESAT---QTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 364
+ TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 217 GNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 4e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = -1
Query: 705 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 574
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 573 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 451
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 450 SGHISRNCPD--------GTKTCYVCGKPGHISREC 367
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = -1
Query: 771 SVXYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 619
S Y C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 618 -ADRCYRCNGTGHIAREC 568
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/49 (46%), Positives = 28/49 (57%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 616
Y+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 255 YECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Frame = -1
Query: 507 NCPEGGRESATQTCYNCNKSGHISRNCPDGT----------------KTCYVCGKPGHIS 376
N E + C+NC + GH++++C G+ CY+CG GH +
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFA 142
Query: 375 RECDEA 358
R+C ++
Sbjct: 143 RDCRQS 148
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 774 SSVXYKCNRTGHFARECT 721
S+ + C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 94.7 bits (225), Expect = 6e-20
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Frame = -1
Query: 756 CNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIA 577
C R GHFAR+C+ V C C GH A +C E+ RC+ C GH+A
Sbjct: 60 CKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCREPGHVA 105
Query: 576 RECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGTKTCYV 400
C+ +E C++C K+GH AR+C R + C NC K GH++ +C + K C
Sbjct: 106 SNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-DKACKN 161
Query: 399 CGKPGHISREC 367
C GHI+R+C
Sbjct: 162 CRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 4e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = -1
Query: 681 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 502
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 501 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 367
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 78.6 bits (185), Expect = 4e-15
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Frame = -1
Query: 777 SSSVXYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 598
+ + + C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTNDK-ACKNC 162
Query: 597 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR---ESATQTCYNCNKSGHISRNC 427
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 426 PD--GTKT---CYVCGKPGHISRECDEAR 355
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 74.9 bits (176), Expect = 5e-14
Identities = 46/130 (35%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Frame = -1
Query: 771 SVXYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 610
SV C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 609 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 447 GHISRNCPDG 418
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = -1
Query: 621 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 442
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 441 ISRNCPDGTKTCYVCGKPGHISRECDEA 358
++ NC + C+ CGK GH +R+C +
Sbjct: 104 VASNCSN-EGICHSCGKSGHRARDCSNS 130
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 81.0 bits (191), Expect = 8e-16
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = -1
Query: 675 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 523
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 522 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 370
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 369 CDEARN 352
C + N
Sbjct: 194 CPDKFN 199
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = -1
Query: 702 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 526
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 525 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 367
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = -1
Query: 468 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 322
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 76.6 bits (180), Expect = 2e-14
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Frame = -1
Query: 783 AMSSSVXYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 613
A + + YKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 612 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 466
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 465 YNCNKSGHISRNCPDGTKTCYVCGK 391
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = -1
Query: 549 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 406
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 405 YVCGKPGHISREC 367
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 463
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 462 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 367
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = -1
Query: 681 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 538
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 537 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 403
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 583
Y+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 80 YRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSED 132
Query: 582 IARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHISR 433
EC Q PD S T GH CP+ S + + N S +
Sbjct: 133 ---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTS 188
Query: 432 NCPDGTKTCYVCGKPGHISREC 367
+ + CY C GHI+R+C
Sbjct: 189 KGRETRRLCYECKGKGHIARDC 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -1
Query: 777 SSSVXYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 610
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 609 CYRCNGTGHIARECAQS 559
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 35.1 bits (77), Expect = 0.054
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Frame = -1
Query: 756 CNRTGHFARECTQGGVV------------SRDSGFNRQREKCFKCNRTGHFARDCKEEAD 613
C R GHF +C V DS R +E + GHF C + +
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE-EEEGHFEHQCPDSSS 165
Query: 612 RCYR--CNGTGHIARECAQSPDEPS------CYNCNKTGHIARNCPEGGR 487
C++ G I+ + CY C GHIAR+CP +
Sbjct: 166 VCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 499
C+ C GH + +C R C+ C H A++C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 498 EGGRE-SATQTCYNCNKSGHISRNCP-DGTK------TCYVCGKPGHI 379
+ + S C C GH C + +K CY+C GH+
Sbjct: 225 DKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL 272
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG- 493
C++C + GH C + + S + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSS 344
Query: 492 ------GRESATQTCYNCNKSGHISRNCPDGTK 412
GRES T CY CN SGH +R CP+ ++
Sbjct: 345 SISTSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 59.3 bits (137), Expect = 3e-09
Identities = 48/170 (28%), Positives = 63/170 (37%), Gaps = 38/170 (22%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------CY 604
Y C +TGH A++C +G + C +C GH CK E + CY
Sbjct: 211 YICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCY 264
Query: 603 RCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT------- 475
C GH+ C P SCY C + GH C +SAT
Sbjct: 265 ICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNS 321
Query: 474 ---QTCYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISREC 367
CY C + GH +R CP+ + CY C GH +REC
Sbjct: 322 REASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.0 bits (134), Expect = 7e-09
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 19/87 (21%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDC------- 628
Y+C + GH C + S ++ FN R+ +C++C GHFAR+C
Sbjct: 288 YRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSIS 347
Query: 627 ----KEEADRCYRCNGTGHIARECAQS 559
+E CYRCNG+GH AREC S
Sbjct: 348 TSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = -1
Query: 774 SSVXYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 595
+S Y+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 594 GTGHIARECAQSPDEPS 544
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -1
Query: 546 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 367
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 366 -DEARN 352
D+ +N
Sbjct: 224 PDKYKN 229
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = -1
Query: 621 EADRCYRCNGTGHIARECAQSPD---------EPSCYNCNKTGHIARNCPEGGRES 481
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 777 SSSVXYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 652
S ++ Y+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Frame = -1
Query: 750 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 571
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 570 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 415
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 414 KT----CYVCGKPGHISREC 367
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 39.9 bits (89), Expect = 0.002
Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 508
C C + GH C E ADR +RC G G H R C +S + + H
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324
Query: 507 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 343
C E G S T T N + SG S G T C C K GH R C +
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384
Query: 342 PPCL 331
CL
Sbjct: 385 DSCL 388
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 556
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = -1
Query: 525 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 373
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 372 ECDEARN*PQP 340
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 612 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 502
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 558 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 427
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 625
+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 102 FNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 556
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = -1
Query: 525 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 373
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 372 ECDEARN*PQP 340
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 47.6 bits (108), Expect = 9e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 612 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 502
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 558 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 427
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 625
+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 61 FNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 556
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = -1
Query: 558 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 379
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 108
Query: 378 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 229
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 109 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 157
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 618 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 460
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = -1
Query: 525 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 373
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 372 EC 367
C
Sbjct: 94 NC 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 601
+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 61 FNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 556
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = -1
Query: 558 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 379
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 119
Query: 378 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 229
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 120 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 168
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 618 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 460
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = -1
Query: 525 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 373
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 372 EC 367
C
Sbjct: 105 NC 106
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 601
+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 72 FNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 556
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/110 (29%), Positives = 49/110 (44%)
Frame = -1
Query: 558 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 379
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 149
Query: 378 SRECDEARN*PQPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAER 229
SR +R+ P+ P L ++R+ S R ++ + S +R
Sbjct: 150 SRSPVRSRS-PRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSPKR 198
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 618 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 460
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = -1
Query: 525 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGKPGHISR 373
T +R P G R+ ++ C+NC GH +R+C D CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 372 EC 367
C
Sbjct: 135 NC 136
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 601
+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 102 FNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 400
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 399 CGKPGH 382
CG H
Sbjct: 92 CGNQDH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -1
Query: 474 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 355
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKEEAD------RCYRCNGTGHIARECA-----QSPDEPSCYNCNKT 523
C+KC + GHFAR C CY C+ GH + C Q + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 522 GH 517
H
Sbjct: 96 DH 97
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 583
YKC + GHFAR C VV++ + C+ C+ GH + C + R + N GH
Sbjct: 37 YKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKGH 88
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 574
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 573 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 487
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 391
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 390 PGHISREC 367
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRCNGT 589
YKC GH AR+C++GG G + G+ R CY C +
Sbjct: 132 YKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGES 191
Query: 588 GHIAREC 568
GH AR+C
Sbjct: 192 GHFARDC 198
Score = 35.1 bits (77), Expect = 0.054
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 420 GTKTCYVCGKPGHISRECDE 361
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGG 712
Y C +GHFAR+CT GG
Sbjct: 186 YSCGESGHFARDCTSGG 202
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 495 GGRESATQTCYNCNKSGHISRNCPDG 418
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 544
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 543 CYNCNKTGHIARNCPEGG 490
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -1
Query: 609 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 429 CPDG 418
C G
Sbjct: 195 CTSG 198
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -1
Query: 546 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 367
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Frame = -1
Query: 762 YKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 628
+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 139 FKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 34.7 bits (76), Expect = 0.071
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 420 GTKTCYVCGKPGHISRECDE 361
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGG 712
Y C +GHFAR+CT GG
Sbjct: 183 YSCGESGHFARDCTSGG 199
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 522 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 418
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -1
Query: 471 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 367
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = -1
Query: 603 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 424
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 423 DGTKTCYVCGKPGHISRECDEARN 352
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 613
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 552 EPSCYNCNKTGHIARNCPEGG 490
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 648 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 550
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGG 712
+KC R GH+AR+C G
Sbjct: 118 FKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 613
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 552 EPSCYNCNKTGHIARNCPEGG 490
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 648 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 550
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGG 712
+KC R GH+AR+C G
Sbjct: 118 FKCRRPGHWARDCPSTG 134
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = -1
Query: 702 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 610
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 420 GTKTCYVCGKPGHISREC 367
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 412
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSG 691
+KC + GHFAREC SRD G
Sbjct: 121 FKCGKPGHFARECPSES--SRDGG 142
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 720 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 568
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 681 QREKCFKCNRTGHFARDC 628
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 582 IARECAQSP-DEPSCYNCNKTGHIARNCP 499
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 426 PDGTKTCYVCGKPGHISREC 367
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 499
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = -1
Query: 591 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 460
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 459 CNKSGHISRNCPD 421
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.054
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = -1
Query: 777 SSSVXYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 601
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 600 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 442
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 441 ISRNCPDG---TKTCYVCGKPGHISREC 367
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = -1
Query: 681 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 502
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 501 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 367
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 474 QTCYNCNKSGHISRNCPD 421
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.071
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 675 EKCFKCNRTGHFARDC 628
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.3 bits (70), Expect = 0.38
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 552 EPSCYNCNKTGHIARNCPEGG 490
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGG 712
+KC R GH+AR+C G
Sbjct: 129 FKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 495 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 358
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 762 YKCNRTGHFARECTQGGVVSRDSGFNRQR 676
Y+C TGHFAREC G R +R R
Sbjct: 102 YECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.12
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 672 KCFKCNRTGHFARDCK 625
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 495 GGRESATQTCYNCNKSGHISRNC 427
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 612 RCYRCNGTGHIAREC 568
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGG 490
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 408 CYVCGKPGHISREC 367
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 780 MSSSVXYKCNRTGHFARECTQG-GVVSRDSGFNRQR 676
+ S Y+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 720 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 625
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 708 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 568
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEG 493
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 408 CYVCGKPGHISRECDEAR 355
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 495 GGRESATQT--CYNCNKSGHISRNCPDG 418
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 780 MSSSVXYKCNRTGHFARECTQG-GVVSRDSGFNRQR 676
+ S Y+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 720 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 625
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 708 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 568
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEG 493
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 408 CYVCGKPGHISRECDEAR 355
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 495 GGRESATQT--CYNCNKSGHISRNCPDG 418
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = -1
Query: 543 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 418
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = -1
Query: 609 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 475
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 537 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 412
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 462 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 358
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 669 CFKCNRTGHFARDCKEEA 616
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 486 ESATQTCYNCNKSGHISRNCP 424
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 408 CYVCGKPGHISREC 367
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 612 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 490
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 717 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 625
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 762 YKCNRTGHFAREC-TQGGVVSRDSGFNRQR 676
Y+C +GHFAREC ++GG R +R R
Sbjct: 99 YECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 492 GRESATQTCYNCNKSGHISRNC 427
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 612 RCYRCNGTGHIAREC 568
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 408 CYVCGKPGHISREC 367
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 424
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 489 RESATQTCYNCNKSGHISRNCPD 421
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 411 TCYVCGKPGHISRECDEAR 355
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 546 SCYNCNKTGHIARNCPE 496
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 556 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 413
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 681 QREKCFKCNRTGHFARDCK 625
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 501 PEGGRESATQTCYNCNKSGHISRNC 427
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 438 SRNCPDGTKTCYVCGKPGHISREC 367
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -1
Query: 669 CFKCNRTGHFARDC--KEEAD 613
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 543 CYNCNKTGHIARNC 502
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 609 CYRCNGTGHIAREC 568
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 490
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 552 EPSCYNCNKTGHIARNCPEGGRESATQ 472
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 471 TCYNCNKSGHISRNCPDGTKTCYV 400
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = -1
Query: 603 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 436
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 435 RNCP 424
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = -1
Query: 678 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 568
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 454
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 453 KSGHISRNCPD----GTKTCYVCGKPGHI 379
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 504 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 358
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -1
Query: 636 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 460
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 459 CNKS 448
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = -1
Query: 468 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 367
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 424
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = -1
Query: 468 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 367
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 424
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 603 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 490
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 477 TQTCYNCNKSGHISRNCPD 421
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGG 490
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 615 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 442
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 441 ISRNC 427
IS+ C
Sbjct: 282 ISKPC 286
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 582 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = -1
Query: 576 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 430
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 429 CPDGTKTCYVCG 394
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 477 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 385
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 487
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 412
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 487
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 412
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 556 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 413
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 556 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 413
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSP 556
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 669 CFKCNRTGHFARDC 628
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 522 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 424
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 394
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = -1
Query: 462 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 337
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 624 EEADRCYRCNGTGHIARECAQS 559
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 555 DEPSCYNCNKTGHIARNCPE 496
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 628
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 447 GHIS 436
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = -1
Query: 750 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 598
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 597 NGTGHIARECA 565
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 472
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 471 TCYNCNKSGHISRNCP 424
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 472
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 471 TCYNCNKSGHISRNCP 424
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 717 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 628
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 468 CYNCNKSGHISRNCPDGTKT 409
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 543 CYNCNKTGHIARNCP 499
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 690 FNRQREKCFKCNRTGHFARDCKEEADR 610
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = -1
Query: 576 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 397
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 396 GKPGHISR 373
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 447 GHISRNCP 424
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -1
Query: 627 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 448
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 447 GHISRNCP 424
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = -1
Query: 609 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 502
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 432 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 518
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = -1
Query: 645 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 475
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 474 QTCYNCNKSGHISRNCPDGTKTCYVCGK 391
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 537 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 537 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 537 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 430
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 382
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 543 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 382
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 532 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 368
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = -1
Query: 609 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 499
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = +3
Query: 420 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 563
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 615 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 445
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 444 HISRNC 427
IS C
Sbjct: 275 EISTPC 280
>At2g20470.1 68415.m02390 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 596
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 243 TDAERRPRHRLK-SEVRLLTCI*TGALRRVRVCXCTT*ASYCVLKHLXKRD 94
T+ R RH+L ++ LLT I GA VRVC T +K L K +
Sbjct: 109 TEYMRLQRHKLGVADFDLLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKAE 159
>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 380
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -1
Query: 345 QPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAERRPRHR--LKSEVRLL 190
Q C ++ C L + +TIS+GRH+ H ++ + +R ++ LK++ LL
Sbjct: 227 QTSCQQFDSHCFL-GNVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLL 279
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = -1
Query: 675 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 502
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 501 PEGGRESATQTCYNCNKSGHISRNC 427
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,610
Number of Sequences: 28952
Number of extensions: 313670
Number of successful extensions: 1613
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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