Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_B18
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.2  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.9  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   9.1  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   9.1  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +3

Query: 96  TELSYFSNNLIHDNKESRDDEPVAHTATIVPSSCSCTVHLTT 221
           T L++ +NNL  +N+E ++    A+   ++ +  S ++ + T
Sbjct: 256 TCLNFITNNLKSENEEFKEKLLAANLCLVIYTLVSVSLVMVT 297


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +3

Query: 96  TELSYFSNNLIHDNKESRDDEPVAHTATIVPSSCSCTVHLTT 221
           T L++ +NNL  +N+E ++    A+   ++ +  S ++ + T
Sbjct: 256 TCLNFITNNLKSENEEFKEKLLAANLCLVIYTLVSVSLVMVT 297


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 600 VHGIYQMNCRMTH*NLP 550
           + G+YQ+N   T  NLP
Sbjct: 362 IKGVYQVNPTKTRTNLP 378


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 315 DQNIKMTLTKMMYQI*RNLPEYL 247
           D+N+   L K++ Q  + +PE+L
Sbjct: 518 DRNLASDLAKILSQAKQEIPEWL 540


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 449 YYPCFIYASFNFFCLPNFNFHSRIN 523
           YY C       F C P   FH++ N
Sbjct: 491 YYRCVHGKPTEFACRPGTVFHTQSN 515


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -1

Query: 607 NLSPWYLPDELPNDTLELAKMAIHRITSVDPTMKIEIWQTEEIEACIDKTWIVSAQSETQ 428
           N+SP Y+    P      A +  + +  +   M   +  T  +   ++  W  SAQ++  
Sbjct: 412 NVSPHYVTPTPPE-----APLFQNVLPPIGGMMNWNMPSTSVVGDMLNMNWNPSAQNDLS 466

Query: 427 KILLSEQP 404
            + LSE P
Sbjct: 467 GVNLSETP 474


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 574 PNDTLELAKMAIHRITSVDPTMKIEIWQTEEIE 476
           P+DT+E  K  I     + P  +  I+  +++E
Sbjct: 399 PSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLE 431


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 574 PNDTLELAKMAIHRITSVDPTMKIEIWQTEEIE 476
           P+DT+E  K  I     + P  +  I+  +++E
Sbjct: 67  PSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLE 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,097
Number of Sequences: 336
Number of extensions: 3386
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)