Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B18
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 28 1.4
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 28 1.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 1.8
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 27 2.4
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 4.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 5.6
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 5.6
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 7.4
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 7.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.8
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 9.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.8
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 27 CVSCTTTSLLGAVRVKITGRFDRTELSYFSN 119
CVS TTT +L + ++ F R +L FSN
Sbjct: 348 CVSDTTTEILSNLENPLSSNFLRNDLCKFSN 378
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 467 YASFNFFCLPNFNFHSRINGSYP-MNSHFG 553
+A F+FF LPN+++ + N S MNS+ G
Sbjct: 437 FAPFDFFWLPNYDYLAVYNDSITHMNSYVG 466
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Frame = -1
Query: 253 IPGFIGQTTLPVVK----CTVH---EQDDGTIVAVCA-TGSSSRDSLLS 131
+PG IG+ ++PVV+ T H E D G ++ +C S S D LLS
Sbjct: 739 VPGDIGEASIPVVQNLQPSTAHVDPESDLGRVIKICDWYQSPSSDVLLS 787
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.4
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Frame = -1
Query: 577 LPNDTL-ELAKMAIHRITSVDPTMKIEIWQTEEIEACIDKTWIVSAQSETQKILLSEQPP 401
LP D++ K RI DP + + Q+E A D+T + Q +
Sbjct: 8 LPGDSVFSRCKTEDSRIKGYDPVISPALIQSEL--AASDETLAFVSDQRRQAADIIAGRD 65
Query: 400 DEPLVVRGPYEVYLKEQVVTYFTLLGKVRPEHKDDFDQDDVSNLKKPSGIPGFIG 236
D L++ GP ++ Y L K +HK D + L+KP G+ G
Sbjct: 66 DRLLLIVGPCSLHDPVAAKEYAIRLQKEAIKHKKDLHIIMRAYLEKPRTTVGWKG 120
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -1
Query: 190 DGTIVAVCATGSSSRDSLLSW---IRLLEKYDNSVL 92
DG ++ + RD +LSW I LL+ Y N VL
Sbjct: 299 DGKVLVLFGENEVFRDEILSWTSKIGLLKAYPNRVL 334
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 253 IPGFIGQTTLPVVKCT 206
IPGF+ Q P++KCT
Sbjct: 608 IPGFLIQFITPIIKCT 623
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 157 SSSRDSLLSWIRLLEKYDNSVLSNLPVIFTLTAPSNDVVVQETQ 26
SSS + S+IR L S+ +P+ TL PSN V T+
Sbjct: 14 SSSLTNDRSYIRNLSNRKTSISRKVPITRTLEDPSNFVAKDGTK 57
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -1
Query: 634 MLYWMPKFKNLSPWYLPDELPND 566
+ Y+ ++K++ PW D +P D
Sbjct: 124 LTYFYKQYKSIEPWLQNDNIPKD 146
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 415 SEQPPDEPLVVRGPYEVYLKEQVVTYFTLLGKVRPEHK-DDFDQDDVSNLKKPSGIPGFI 239
+E P ++V+ P ++ EQ++T V PE D F + ++ L K G P F
Sbjct: 87 NEDPTVHGIIVQLPLPAHINEQIIT-----EAVAPEKDVDGFCETNLGKLTKREGQPLFT 141
Query: 238 GQT 230
T
Sbjct: 142 ACT 144
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 469 IDKTWIVSAQSETQKILLSEQPPDEPLVVRGPYEVYLKEQVVTYFTLLGKVRPEHKDDFD 290
IDK S + + L+S PD PL++R + LK F + PE +
Sbjct: 879 IDKDEFSSGIASIRGTLMSSVLPDAPLIIRDMI-IRLKP---PKFCNSALIDPEFLKCLN 934
Query: 289 QDDVSNLKK 263
+D ++ LKK
Sbjct: 935 EDQITALKK 943
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 555 SSNVSFGNSSGKYHGLRFLNLG 620
++N +F GK + LRF+N+G
Sbjct: 200 TANATFAMEPGKTYRLRFINIG 221
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 9.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 265 KPSGIPGFIGQTTLPVVKCTVHEQDDGTIVAVCATG--SSSRDSLLSWIRLLEKYDNSV 95
KP P F T P+V+ T HE DD + + SS D++ L KYDN+V
Sbjct: 1296 KPLKQPDFNIYET-PIVRSTAHETDDEQTPSKYSDNRVESSSDTVFENTDL--KYDNNV 1351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,267
Number of Sequences: 5004
Number of extensions: 56011
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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