Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B18
(667 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24) 40 0.001
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47158| Best HMM Match : pKID (HMM E-Value=0.22) 29 3.4
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 29 3.4
SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6) 29 3.4
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_45838| Best HMM Match : Sigma70_r1_1 (HMM E-Value=2.6) 28 5.9
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_11397| Best HMM Match : ECSIT (HMM E-Value=1.7e-24)
Length = 316
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -1
Query: 667 KRGIPLXKFWRMLYWMPKFKNLSPWYLPDELPNDTLELAKMAIHRIT 527
K P+ K R+ YW+ K + + P LP ELP LEL+ +A+ R++
Sbjct: 231 KASQPVQKVRRLAYWLTKLEEMFPSPLPAELPEGELELSMVAMERMS 277
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 322 KVRPEHKDDFDQDDVSNLKKPSGIPGFIGQTTLPVVKCTVHEQDDGTIVAVCATGSSSRD 143
K+R + + +S++ S G G+T V KCT Q DG C G + D
Sbjct: 950 KLRASYSTSVAESSLSDVLMDSAAAGLTGETAKSVEKCTCPPQADGGSCEYCGKGFTRSD 1009
>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 27 CVSCT-TTSLLGAVRVKITG-RFDRTELSYFS-NNLIHDNKESRDDEPVAHTATIVPSSC 197
C C TT+L+G VR +TG F +S + LI + + H +VPS C
Sbjct: 1061 CRRCPQTTALVGKVRPFMTGCAFGNAVISVITPGTLISPHYGPTNCRVRCHVPLVVPSGC 1120
Query: 198 SCTVHL 215
TV L
Sbjct: 1121 KLTVDL 1126
>SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 583 DELPNDTLELAKMAIHRITSVDPTMKIEI-WQTEEIEACIDKTW 455
D++P T E K R+TSVD M IEI +T E ++ + + W
Sbjct: 6 DDIPEITDETKKAMSGRLTSVDVPMCIEISLKTNEGDSMVLENW 49
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 172 VCATGSSSRDSLLSWIRLLEKYDNSVLSNLPVIFTLTAPSNDVVVQETQPAAE 14
V A SSS L+W E Y N +L V + T SN VV T P ++
Sbjct: 1381 VTAKNSSSTTLTLTWSPPDEFYLNGILQGYRVFWQKTFESNPVVHNMTVPTSD 1433
>SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)
Length = 217
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 583 DELPNDTLELAKMAIHRITSVDPTMKIEI-WQTEEIEACIDKTW 455
D++P T E K R+TSVD M IEI +T E ++ + + W
Sbjct: 6 DDIPEITDETKKAMSGRLTSVDVPMCIEISLKTNEGDSMVLENW 49
>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 118 IILSTITKNLVMMNLWHIQLLLYHHPAHVQYI 213
II TI ++M+N++ QL YHHP + +++
Sbjct: 103 IITITIIITIIMINIYLYQLHRYHHPHNRRHL 134
>SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 472 CIDKTWIVSAQSETQKILLSEQPPDEPLVVRGPYEVYLKEQVVTYFTLLGKVRPEHKDD 296
C K V S+ Q +L+ QPP + L + +KE V+Y+T ++RP +D
Sbjct: 49 CHGKGSSVYTGSKRQDYVLAPQPPIQKLKQKSSAYSCIKESQVSYYT-QRRIRPSTLED 106
>SB_51820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 69 VKITGRFDRTELSYFSNNLIHDNKESRDDE 158
V I R + E++Y +NN +H+N + DD+
Sbjct: 18 VTIIIRQNAKEIAYLNNNALHNNDDDDDDD 47
>SB_45838| Best HMM Match : Sigma70_r1_1 (HMM E-Value=2.6)
Length = 166
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 619 PKFKNLSPWYLPDELPNDTLELAKMAIHRITSVDPTMKIEIW 494
P NL W++ + D L L + +H++TS D + + +W
Sbjct: 8 PGLYNLEHWHVVVK-EGDCLYLPFLWVHQVTSYDSNVAVNVW 48
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = -1
Query: 325 GKVRPEHKDDFDQDDVSNLKKPSGIPGFIGQTTLPVVKCTVHEQDDGTIVAVCATGSSS 149
G++ +DD D+D K I + V+C DD C GS+S
Sbjct: 457 GEINQAEEDDVDKDKDVEEKAADAIVNTVSDDVRETVQCVNTVSDDVQETVQCVDGSTS 515
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,719
Number of Sequences: 59808
Number of extensions: 395474
Number of successful extensions: 1213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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