Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_B18
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006720-1|AAF60446.1| 350|Caenorhabditis elegans Hypothetical ... 67 9e-12
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical pr... 28 6.8
U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical... 28 6.8
AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 28 6.8
AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 28 6.8
AC006747-2|AAF60508.1| 264|Caenorhabditis elegans Hypothetical ... 27 9.1
>AC006720-1|AAF60446.1| 350|Caenorhabditis elegans Hypothetical
protein Y17G9B.5 protein.
Length = 350
Score = 67.3 bits (157), Expect = 9e-12
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Frame = -1
Query: 646 KFWRMLYWMPKFKNLSPWYLPDELPNDTL---ELAKMAIHRITSVDPTMKIEIWQTEEIE 476
K RMLYWMPK K+ + + + +L ELA +A+ ++ S D I + + +
Sbjct: 152 KVKRMLYWMPKLKHSNKYLDRRHVEGKSLSPSELAGIAL-KMMSRDAASSISLLKLSDSS 210
Query: 475 ACIDKTWIVSAQSETQKILLSEQPPDEPLVVRGPYEVYLKEQVVTYFTLLGKVRPEHKDD 296
K W+ ++QS Q+IL+SE + + V +VYL+++V+ + TL G + E ++
Sbjct: 211 DPQQK-WLATSQSPMQQILISELRKGDEVFVDAA-KVYLQDRVIPFITLTGNTKLEPLNE 268
Query: 295 FDQDDVSNLKKPSGIPGFIGQTTLPVVKCTVHEQDDGTIVAVCATGSSSRDSLLSWIRLL 116
F +D+ + + Q K ++HEQD TI A+ A + + WI L
Sbjct: 269 FKNEDMDE-DYTNWYADW--QKQRGEAKRSIHEQDHETIFAMGAMYKDDNATAIRWIDNL 325
Query: 115 EKYDNSVLSNL 83
+K N + NL
Sbjct: 326 QK-TNPNMENL 335
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 448 SAQSETQKILLSEQPPDEPLVVRGP---YEVYLKEQVVTYFTLLGKVRP 311
S Q+ +K L+ +PP +P++ R P YE+Y K+ + GK P
Sbjct: 276 SYQNNIKKALIPGKPPGQPIIRRKPASWYEMYKKQVDSLKEQVYGKPNP 324
>Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 396 SSGGCSESNIFCVS-LWALTIHVLSMQASISSVCQISI 506
+S GC +SNI+ S + L +H+L +S Q+SI
Sbjct: 436 TSSGCKKSNIYLPSVMLLLKLHILFSDVRATSSTQLSI 473
>Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 396 SSGGCSESNIFCVS-LWALTIHVLSMQASISSVCQISI 506
+S GC +SNI+ S + L +H+L +S Q+SI
Sbjct: 436 TSSGCKKSNIYLPSVMLLLKLHILFSDVRATSSTQLSI 473
>U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical
protein T10E9.3 protein.
Length = 583
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 205 VHEQDDGTIVAVCATGSSSRDSLLSW 128
V Q+DG + +C+TG + + + W
Sbjct: 186 VKRQEDGDVAPICSTGGEDQKNRIEW 211
>AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical
protein Y37D8A.23c protein.
Length = 433
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 619 PKFKNLSPWYLPDELPNDTLELAKMAIHRITSVDPTMKIEIWQ 491
P+F N+ WY+P ++ N LE A+M R+ + P +K + Q
Sbjct: 347 PEFLNICFWYVPSKIRN--LEPAEMRA-RLEKIAPKIKAGMMQ 386
>AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical
protein Y37D8A.23a protein.
Length = 508
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 619 PKFKNLSPWYLPDELPNDTLELAKMAIHRITSVDPTMKIEIWQ 491
P+F N+ WY+P ++ N LE A+M R+ + P +K + Q
Sbjct: 422 PEFLNICFWYVPSKIRN--LEPAEMRA-RLEKIAPKIKAGMMQ 461
>AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid
decarboxylase protein.
Length = 508
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 619 PKFKNLSPWYLPDELPNDTLELAKMAIHRITSVDPTMKIEIWQ 491
P+F N+ WY+P ++ N LE A+M R+ + P +K + Q
Sbjct: 422 PEFLNICFWYVPSKIRN--LEPAEMRA-RLEKIAPKIKAGMMQ 461
>AC006747-2|AAF60508.1| 264|Caenorhabditis elegans Hypothetical
protein Y39A3A.2 protein.
Length = 264
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 87 FDRTELSYFSNNLIHDNKESRDD 155
F+ TEL + +N++IH+ K S DD
Sbjct: 100 FNTTELEWLNNDVIHNLKFSTDD 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,712
Number of Sequences: 27780
Number of extensions: 311283
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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